Browsing by Author "Doubek, Jonathan P."

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    Calanoid copepod zooplankton density is positively associated with water residence time across the continental United States
    Doubek, Jonathan P.; Carey, Cayelan C.; Lavender, Michael; Winegardner, Amanda K.; Beaulieu, Marieke; Kelly, Patrick T.; Pollard, Amina I.; Straile, Dietmar; Stockwell, Jason D. (PLOS, 2019-01-09)
    Inherent differences between naturally-formed lakes and human-made reservoirs may play an important role in shaping zooplankton community structure. For example, because many reservoirs are created by impounding and managing lotic systems for specific human purposes, zooplankton communities may be affected by factors that are unique to reservoirs, such as shorter water residence times and a reservoir’s management regime, compared to natural lakes. However, the environmental factors that structure zooplankton communities in natural lakes vs. reservoirs may vary at the continental scale and remain largely unknown. We analyzed data from the 2007 U.S. Environmental Protection Agency’s National Lakes Assessment and the U.S. Army Corps of Engineers’ National Inventory of Dams to compare large-bodied crustacean zooplankton communities (defined here as individuals retained by 0.243 mm mesh size) in natural lakes and reservoirs across the continental U.S. using multiple linear regressions and regression tree analyses. We found that large-bodied crustacean zooplankton density was overall higher in natural lakes compared to reservoirs when the effect of latitude was controlled. The difference between waterbody types was driven by calanoid copepods, which were also more likely to be dominant in the >0.243 mm zooplankton community in natural lakes than in reservoirs. Regression tree analyses revealed that water residence time was not a major driver of calanoid copepod density in natural lakes but was one of the most important drivers of calanoid copepod density in reservoirs, which had on average 0.5-year shorter water residence times than natural lakes. Reservoirs managed for purposes that resulted in shorter residence times (e.g., hydroelectric power) had lower zooplankton densities than reservoirs managed for purposes that resulted in longer residence times (e.g., irrigation). Consequently, our results indicate that water residence time may be an important characteristic driving differing large-bodied zooplankton dynamics between reservoirs and natural lakes.
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    Dynamic modeling of organic carbon fates in lake ecosystems
    McCullough, Ian M.; Dugan, Hilary A.; Farrell, Kaitlin J.; Morales-Williams, Ana M.; Ouyang, Zutao; Roberts, Derek C.; Scordo, Facundo; Bartlett, Sarah L.; Burke, Samantha M.; Doubek, Jonathan P.; Krivak-Tetley, Flora E.; Skaff, Nicholas K.; Summers, Jamie C.; Weathers, Kathleen C.; Hanson, Paul C. (2018-10-24)
    Lakes are active processors of organic carbon (OC) and play important roles in landscape and global carbon cycling. Allochthonous OC loads from the landscape, along with autochthonous OC loads from primary production, are mineralized in lakes, buried in lake sediments, and exported via surface or groundwater outflows. Although these processes provide a basis for a conceptual understanding of lake OC budgets, few studies have integrated these fluxes under a dynamic modeling framework to examine their interactions and relative magnitudes. We developed a simple, dynamic mass balance model for OC, and applied the model to a set of five lakes. We examined the relative magnitudes of OC fluxes and found that long-term (> 10 year) lake OC dynamics were predominantly driven by allochthonous loads in four of the five lakes, underscoring the importance of terrestrially-derived OC in northern lake ecosystems. Our model highlighted seasonal patterns in lake OC budgets, with increasing water temperatures and lake productivity throughout the growing season corresponding to a transition from burial- to respiration-dominated OC fates. Ratios of respiration to burial, however, were also mediated by the source (autochthonous vs. allochthonous) of total OC loads. Autochthonous OC is more readily respired and may therefore proportionally reduce burial under a warming climate, but allochthonous OC may increase burial due to changes in precipitation. The ratios of autochthonous to allochthonous inputs and respiration to burial demonstrate the importance of dynamic models for examining both the seasonal and inter-annual roles of lakes in landscape and global carbon cycling, particularly in a global change context. Finally, we highlighted critical data needs, which include surface water DOC observations in paired tributary and lake systems, measurements of OC burial rates, groundwater input volume and DOC, and budgets of particulate OC.
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    The effects of hypolimnetic anoxia on the diel vertical migration of freshwater crustacean zooplankton
    Doubek, Jonathan P.; Campbell, Kylie L.; Doubek, Kaitlyn M.; Hamre, Kathleen D.; Lofton, Mary E.; McClure, Ryan P.; Ward, Nicole K.; Carey, Cayelan C. (Ecological Society of America, 2018-07)
    Lakes and reservoirs worldwide are increasingly experiencing depletion of dissolved oxygen (anoxia) in their bottom waters (the hypolimnion) because of climate change and eutrophication, which is altering the dynamics of many freshwater ecological communities. Hypolimnetic anoxia may substantially alter the daily migration and distribution of zooplankton, the dominant grazers of phytoplankton in aquatic food webs. In waterbodies with oxic hypolimnia, zooplankton exhibit diel vertical migration (DVM), in which they migrate to the dark hypolimnion during the day to escape fish predation or ultraviolet (UV) radiation damage in the well-lit surface waters (the epilimnion). However, due to the physiologically stressful conditions of anoxic hypolimnia, we hypothesized that zooplankton may be forced to remain in the epilimnion during daylight, trading oxic stress for increased predation risk or UV radiation damage. To examine how anoxia impacts zooplankton vertical migration, distribution, biomass, and community composition over day-night periods, we conducted multiple diel sampling campaigns on reservoirs that spanned oxic, hypoxic, and anoxic hypolimnetic conditions. In addition, we sampled the same reservoirs fortnightly during the daytime to examine the vertical position of zooplankton throughout the summer stratified season. Under anoxic conditions, most zooplankton taxa were predominantly found in the epil-imnion during the day and night, did not exhibit DVM, and had lower seasonal biomass than in reservoirs with oxic hypolimnia. Only the phantom midge larva, Chaoborus spp., was consistently anoxia-tolerant. Consequently, our results suggest that hypolimnetic anoxia may alter zooplankton migration, biomass, and behavior, which may in turn exacerbate water quality degradation due to the critical role zooplankton play in freshwater ecosystems.
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    Enhancing collaboration between ecologists and computer scientists: lessons learned and recommendations forward
    Carey, Cayelan C.; Ward, Nicole K.; Farrell, Kaitlin J.; Lofton, Mary E.; Krinos, Arianna, I.; McClure, Ryan P.; Subratie, Kensworth C.; Figueiredo, Renato J.; Doubek, Jonathan P.; Hanson, Paul C.; Papadopoulos, Philip; Arzberger, Peter (Ecological Society of America, 2019-05)
    In the era of big data, ecologists are increasingly relying on computational approaches and tools to answer existing questions and pose new research questions. These include both software applications (e.g., simulation models, databases and machine learning algorithms) and hardware systems (e.g., wireless sensor networks, supercomputing, drones and satellites), motivating the need for greater collaboration between computer scientists and ecologists. Here, we outline some synergistic opportunities for scientists in both disciplines that can be gained by building collaborations between the computer science and ecology research communities, with a focus on the benefits to ecology specifically. We also identify past contributions of computer science to ecology, including high-frequency environmental sensor technology, advanced supercomputing capacity for ecological modeling, databases for long-term and high-frequency datasets, and software programs for ecological analyses, to anticipate future potential contributions. These examples highlight the power and potential for further integration of computer science technology and ideas into the ecological research community. Finally, we translate our own experiences working together as a team of computer scientists and ecologists over the past decade into a conceptual framework with recommendations for supporting productive collaborations at the interface of the two disciplines. We specifically focus on how to apply best practices of team science for bridging computer science and ecology, which we advocate will substantially benefit ecology long-term.
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    Hypolimnetic Hypoxia Increases the Biomass Variability and Compositional Variability of Crustacean Zooplankton Communities
    Doubek, Jonathan P.; Campbell, Kylie L.; Lofton, Mary E.; McClure, Ryan P.; Carey, Cayelan C. (MDPI, 2019-10-19)
    In freshwater lakes and reservoirs, climate change and eutrophication are increasing the occurrence of low-dissolved oxygen concentrations (hypoxia), which has the potential to alter the variability of zooplankton seasonal dynamics. We sampled zooplankton and physical, chemical and biological variables (e.g., temperature, dissolved oxygen, and chlorophyll a) in four reservoirs during the summer stratified period for three consecutive years. The hypolimnion (bottom waters) of two reservoirs remained oxic throughout the entire stratified period, whereas the hypolimnion of the other two reservoirs became hypoxic during the stratified period. Biomass variability (measured as the coefficient of the variation of zooplankton biomass) and compositional variability (measured as the community composition of zooplankton) of crustacean zooplankton communities were similar throughout the summer in the oxic reservoirs; however, biomass variability and compositional variability significantly increased after the onset of hypoxia in the two seasonally-hypoxic reservoirs. The increase in biomass variability in the seasonally-hypoxic reservoirs was driven largely by an increase in the variability of copepod biomass, while the increase in compositional variability was driven by increased variability in the dominance (proportion of total crustacean zooplankton biomass) of copepod taxa. Our results suggest that hypoxia may increase the seasonal variability of crustacean zooplankton communities.
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    Oxygen dynamics control the burial of organic carbon in a eutrophic reservoir
    Carey, Cayelan C.; Doubek, Jonathan P.; McClure, Ryan P.; Hanson, Paul C. (Wiley-Blackwell, 2017-12-06)
    Organic carbon (OC) mineralization in freshwaters is dependent on oxygen availability near the sediments, which controls whether OC inputs will be buried or respired. However, oxygen dynamics in waterbodies are changing globally due to land use and climate, and the consequences of variable oxygen conditions for OC burial are unknown. We manipulated hypolimnetic oxygen availability in a whole‐reservoir experiment and used a mass balance OC model to quantify rates of OC burial. Throughout summer stratification, we observed that OC burial rates were tightly coupled to sediment oxygen concentrations: oxic conditions promoted the mineralization of “legacy” OC that had accumulated over years of sedimentation, resulting in negative OC burial. Moreover, our study demonstrates that fluctuating oxygen conditions can switch ecosystem‐scale OC burial in a reservoir between positive and negative rates. Consequently, changing oxygen availability in freshwaters globally will likely have large implications for the role of these ecosystems as OC sinks.
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    Salting our freshwater lakes
    Dugan, Hilary A.; Bartlett, Sarah L.; Burke, Samantha M.; Doubek, Jonathan P.; Krivak-Tetley, Flora E.; Skaff, Nicholas K.; Summers, Jamie C.; Farrell, Kaitlin J.; McCullough, Ian M.; Morales-Williams, Ana M.; Roberts, Derek C.; Ouyang, Zutao; Scordo, Facundo; Hanson, Paul C.; Weathers, Kathleen C. (NAS, 2017-03-08)
    The highest densities of lakes on Earth are in north temperate ecosystems, where increasing urbanization and associated chloride runoff can salinize freshwaters and threaten lake water quality and the many ecosystem services lakes provide. However, the extent to which lake salinity may be changing at broad spatial scales remains unknown, leading us to first identify spatial patterns and then investigate the drivers of these patterns. Significant decadal trends in lake salinization were identified using a dataset of long-term chloride concentrations from 371 North American lakes. Landscape and climate metrics calculated for each site demonstrated that impervious land cover was a strong predictor of chloride trends in Northeast and Midwest North American lakes. As little as 1% impervious land cover surrounding a lake increased the likelihood of long-term salinization. Considering that 27% of large lakes in the United States have >1% impervious land cover around their perimeters, the potential for steady and long-term salinization of these aquatic systems is high. This study predicts that many lakes will exceed the aquatic life threshold criterion for chronic chloride exposure (230 mg L⁻¹), stipulated by the US Environmental Protection Agency (EPA), in the next 50 y if current trends continue.