VTechWorks staff will be away for the Thanksgiving holiday beginning at noon on Wednesday, November 27, through Friday, November 29. We will resume normal operations on Monday, December 2. Thank you for your patience.

Browsing by Author "Phillips, John B."

Now showing 1 - 20 of 24
  • Thumbnail Image
    Behavioral Investigation of the Light-Dependent Magnetoreception Mechanism of Drosophila melanogaster
    Dommer, David H. (Virginia Tech, 2008-04-25)
    Use of a magnetic compass has been demonstrated in all major classes of vertebrates as well as several classes of invertebrates, and is proposed to involve a photo-induced radical pair mechanism (RPM). My dissertation research consisted of characterizing a magnetic compass in a model species, Drosophila melanogaster. Preliminary experiments were carried out with adult flies, however, due to the behavioral complexity of adult responses a new behavioral assay of magnetic compass orientation was developed using larval Drosophila that elicits a robust magnetic compass response in a trained magnetic direction. This manuscript describes experiments that were conducted showing that larval magnetic compass orientation: 1) demonstrates a complex 3-dimensional pattern of response consistent with a RPM; 2) is consistent with a receptor mechanism that utilizes short- and long-wavelength antagonistic photopigments, proposed to explain wavelength dependent effects in vertebrates (e.g. amphibians and birds); and 3) produces axially symmetrical patterns of response with respect to the geomagnetic field. Additionally, tests of adult Drosophila under low and high intensities of monochromatic long wavelength light revealed a similar behavioral response to varying intensities of monochromatic light as previously reported in migratory birds (E. rubecula). These findings indicate that the magnetic compass of larval Drosophila shares a common functional architecture and similar biophysical mechanism with that of at least some vertebrates (e.g. amphibians and possibly birds), suggesting that the magnetic compass of modern vertebrates may have evolved once in a common ancestor of these three lineages over 450 million years ago. Furthermore, findings indicating a spontaneous preference for magnetic directions in D. melanogaster larvae suggest that a light-dependent magnetoreception mechanism is more widespread in insects than was previously suspected. The development of a behavioral assay to study the light-dependent magnetic compass in an organism with a simple nervous system, a limited behavioral repertoire, and with the possibility of using the full power of modern molecular and genetic techniques holds considerable promise to increase our understanding of the biophysical mechanism(s) and neurophysiological structures underlying magnetic orientation in terrestrial animals.
  • Thumbnail Image
    A behavioral perspective on the biophysics of the light-dependent magnetic compass: a link between directional and spatial perception?
    Phillips, John B.; Muheim, Rachel; Jorge, Paulo E. (Company of Biologists Ltd., 2010-10)
    In terrestrial organisms, sensitivity to the Earth's magnetic field is mediated by at least two different magnetoreception mechanisms, one involving biogenic ferromagnetic crystals (magnetite/maghemite) and the second involving a photo-induced biochemical reaction that forms long-lasting, spin-coordinated, radical pair intermediates. In some vertebrate groups (amphibians and birds), both mechanisms are present; a light-dependent mechanism provides a directional sense or 'compass', and a non-light-dependent mechanism underlies a geographical-position sense or 'map'. Evidence that both magnetite-and radical pair-based mechanisms are present in the same organisms raises a number of interesting questions. Why has natural selection produced magnetic sensors utilizing two distinct biophysical mechanisms? And, in particular, why has natural selection produced a compass mechanism based on a light-dependent radical pair mechanism (RPM) when a magnetite-based receptor is well suited to perform this function? Answers to these questions depend, to a large degree, on how the properties of the RPM, viewed from a neuroethological rather than a biophysical perspective, differ from those of a magnetite-based magnetic compass. The RPM is expected to produce a light-dependent, 3-D pattern of response that is axially symmetrical and, in some groups of animals, may be perceived as a pattern of light intensity and/or color superimposed on the visual surroundings. We suggest that the light-dependent magnetic compass may serve not only as a source of directional information but also provide a spherical coordinate system that helps to interface metrics of distance, direction and spatial position.
  • Thumbnail Image
    Bifurcation Analysis and Qualitative Optimization of Models in Molecular Cell Biology with Applications to the Circadian Clock
    Conrad, Emery David (Virginia Tech, 2006-04-14)
    Circadian rhythms are the endogenous, roughly 24-hour rhythms that coordinate an organism's interaction with its cycling environment. The molecular mechanism underlying this physiological process is a cell-autonomous oscillator comprised of a complex regulatory network of interacting DNA, RNA and proteins that is surprisingly conserved across many different species. It is not a trivial task to understand how the positive and negative feedback loops interact to generate an oscillator capable of a) maintaining a 24-hour rhythm in constant conditions; b) entraining to external light and temperature signals; c) responding to pulses of light in a rather particular, predictable manner; and d) compensating itself so that the period is relatively constant over a large range of temperatures, even for mutations that affect the basal period of oscillation. Mathematical modeling is a useful tool for dealing with such complexity, because it gives us an object that can be quickly probed and tested in lieu of the experiment or actual biological system. If we do a good job designing the model, it will help us to understand the biology better by predicting the outcome of future experiments. The difficulty lies in properly designing a model, a task that is made even more difficult by an acute lack of quantitative data. Thankfully, our qualitative understanding of a particular phenomenon, i.e. the observed physiology of the cell, can often be directly related to certain mathematical structures. Bifurcation analysis gives us a glimpse of these structures, and we can use these glimpses to build our models with greater confidence. In this dissertation, I will discuss the particular problem of the circadian clock and describe a number of new methods and tools related to bifurcation analysis. These tools can effectively be applied during the modeling process to build detailed models of biological regulatory with greater ease.
  • Thumbnail Image
    Characterizing the Role of Magnetic Cues Underlying Spatial Behavior
    Painter, Michael Scott (Virginia Tech, 2017-01-09)
    In the 50+ years since the discovery of magnetic compass orientation by migratory songbirds, evidence for the use of magnetic cues has been obtained for a range of taxonomic groups, including several classes of vertebrate and invertebrate taxa. Surprisingly, however, the biophysical mechanisms and biological substrate that underlie magnetic sensing are still not fully understood. Moreover, while use of magnetic cues for compass orientation is intuitive, the functional significance of other forms of behavioral responses mediated by magnetic cues, such as spontaneous magnetic alignment, is less clear. The following research was carried out to investigate the mechanisms underlying magnetic orientation in vertebrates and invertebrates. This involved the modification of existing experimental systems to characterize responses to magnetic cues in laboratory animals (flies, mice) and the development of novel techniques for studying the role of magnetic cues in the spatial behavior of free-living animals (red foxes). Chapter II examines magnetic orientation in wild-type Drosophila melanogaster larvae. We show that three strains of larvae reared under non-directional ultraviolet (UV) light exhibit quadramodal spontaneous orientation along the anti-cardinal compass directions (i.e. northeast, southeast, southwest, northwest) when tested in a radially symmetrical environment under UV light. Double-blind experiments cancelling the horizontal component of the magnetic field confirmed that the response is dependent on magnetic cues rather non-magnetic features of the test environment. Furthermore, we argue that the larval quadramodal pattern of response is consistent with properties of magnetic compass orientation observed in previous studies of adult Drosophila and laboratory mice, both of which have been proposed to be mediated by a light-dependent magnetic compass mechanism. Chapter III explores the use of novel biologging techniques to collect behavioral and spatial data from free-roaming mammals. Specifically, a previous observational study of free- roaming red foxes found a 4-fold increase in the success of predatory 'mousing' attacks when foxes were facing ~north-northeast, consistent with magnetic alignment responses reported for a range of terrestrial animals. The authors propose that the magnetic field may be used to increase accuracy of mousing attacks. Using tri-axial accelerometer and magnetometer bio-loggers fitted to semi-domesticated red foxes, we created ']magnetic ethograms' from behavioral and magnetic machine learning algorithms 'trained'] to identify three discrete behaviors (i.e. foraging, trotting, and mousing-like jumps) from raw accelerometer signatures and to classify the magnetic headings of mousing-like jumps into 45° sectors from raw magnetometer data. The classifier's ability to accurately identify behaviors from a separate fox not used to train the algorithm suggests that these techniques can be used in future experiments to obtain reliable magnetic ethograms for free-roaming foxes. We also developed the first radio-frequency emitting collar that broadcasts in the low MHz frequency range shown to disrupt magnetic compass responses in a host of animals. The radio-frequency collars coupled with biologgers will provide a powerful tool to characterize magnetic alignment responses in predatory red foxes and can be adapted for use in studies of magnetic alignment and magnetic compass orientation in other free-roaming mammals. Chapter 3 discusses findings from a magnetic nest building assay involving male labratory mice. Mice trained to position nests in one of four directions relative to the magnetic field exhibited both learned magnetic compass responses and fixed magnetic nest positioning orientation consistent with northeast-southwest spontaneous magnetic alignment behavior previously reported for wild mice and bank voles. This is the first mammalian assay in which both learned magnetic compass orientation and spontaneous magnetic alignment were exhibited in the same species, and suggests that the use of magnetic cues in rodents may be more flexible that previously realized.
  • Thumbnail Image
    Demography and Behavior of Western Sandpipers (Calidris mauri) Breeding on the Yukon-Kuskokwim River Delta, Alaska
    Johnson, James Matthew (Virginia Tech, 2006-08-07)
    I conducted demographic and behavioral studies of Western Sandpipers (Calidris mauri) breeding on the Yukon-Kuskokwim River Delta, Alaska (1998-2005). In chapter one, I estimated apparent annual survival (product of true survival and site fidelity) while correcting for the probability of encounter for 237 males and 296 females. Overall return rates (individual returned to the site in a subsequent season) were lower for females (40%) than males (65%), as was apparent annual survival (± SE, females = 0.65 ± 0.05, males = 0.78 ± 0.03), and encounter rate (females = 0.51 ± 0.07, males = 0.74 ± 0.04). In chapter two, I examined the effects of mate and site fidelity on nesting success (N = 430 nests). Annual divorce rate ranged between 37-83%, with 17-63% of pairs reuniting annually. Reuniting pairs initiated clutches earlier than newly formed pairs, and clutches that were initiated early in the season had higher nest success rates compared to late-season nests. When I controlled for clutch-initiation date, nests tended by individuals with prior breeding-site experience had higher daily survival rates compared to birds breeding at the site for the first time. The effect of site experience was greater for males than females. In chapter 3, I reported that Western Sandpipers exhibited aggregated breeding behavior on a 36 ha plot. Breeding aggregations occurred when dominant and/or older individuals excluded younger, subordinate individuals from preferred habitat. The pattern of habitat occupancy conformed to an ideal despotic distribution with aggregated nesting birds in less preferred habitat experiencing lower reproductive success. In chapter 4, I described and demonstrated the form and function of parent-chick communication in the Western Sandpiper. Through experimental playback of adult vocalizations to chicks in the field, I demonstrated: (1) chicks respond to the alarm call by vocalizing relatively less often and moving away from the signal source, (2) chicks respond to the gather call by vocalizing relatively more often and moving toward the signal source, (3) and chicks respond to the freeze call by vocalizing relatively less often and crouching motionless on the substrate for extended periods of time. I also describe two distinct chick vocalizations (chick-contact and chick-alarm calls).
  • Thumbnail Image
    Ectosymbionts alter spontaneous responses to the Earth’s magnetic field in a crustacean
    Landler, Lukas; Skelton, James; Painter, Michael Scott; Youmans, Paul W.; Muheim, Rachel; Creed, Robert P.; Brown, Bryan L.; Phillips, John B. (Nature Publishing Group, 2019-02-28)
    Magnetic sensing is used to structure every-day, non-migratory behaviours in many animals. We show that crayfish exhibit robust spontaneous magnetic alignment responses. These magnetic behaviours are altered by interactions with Branchiobdellidan worms, which are obligate ectosymbionts. Branchiobdellidan worms have previously been shown to have positive effects on host growth when present at moderate densities, and negative effects at relatively high densities. Here we show that crayfish with moderate densities of symbionts aligned bimodally along the magnetic northeast-southwest axis, similar to passive magnetic alignment responses observed across a range of stationary vertebrates. In contrast, crayfish with high symbiont densities failed to exhibit consistent alignment relative to the magnetic field. Crayfish without symbionts shifted exhibited quadramodal magnetic alignment and were more active. These behavioural changes suggest a change in the organization of spatial behaviour with increasing ectosymbiont densities. We propose that the increased activity and a switch to quadramodal magnetic alignment may be associated with the use of systematic search strategies. Such a strategy could increase contact-rates with conspecifics in order to replenish the beneficial ectosymbionts that only disperse between hosts during direct contact. Our results demonstrate that crayfish perceive and respond to magnetic fields, and that symbionts influence magnetically structured spatial behaviour of their hosts. © 2019, The Author(s).
  • Thumbnail Image
    The effect of aphids in parasitoid-caterpillar-plant interactions
    Lentz, Amanda Jean (Virginia Tech, 2007-07-19)
    The ecology and evolution of a species is often considered only within the context of pairwise interactions even though a species' distribution and abundance may be determined by interactions with many species within and between trophic levels. Multiple herbivores often share the same host and may interact indirectly by altering the relationships between herbivores, their host plants and their parasitoids. However, the relationships between parasitoids and herbivore hosts have typically been studied in isolation of other herbivore species. I examined how the outcomes of species interactions change when multiple relationships are considered. Chapter 1 examined the potentially conflicting selection pressures Manduca sexta exerts on Nicotiana tabacum (tobacco), since M. sexta has pollinating adults but herbivorous larvae. I demonstrated that high nectar amino acids do not affect floral visitation, but increased oviposition of herbivores on leaves. Thus, the relative costs and benefits of nectar rewards may depend on the community of pollinators and their life histories. In the remaining chapters I examined how feeding on tobacco by the aphid Myzus persicae altered the interactions between a parasitoid (Cotesia congregata) and its hornworm host (M. sexta). Chapter 2 demonstrated that aphids reduced hornworm abundance and parasitism. Changes in hornworm abundance were not due to density-dependent changes in moth oviposition, but the proportion of caterpillars attacked by parasitoids was inversely density dependent with hornworm density. Chapter 3 examined whether changes in hornworm abundance and parasitism reflected aphid-induced changes in host plant quality or volatile emissions. Aphids increased hornworm mortality, did not affect parasitoid performance, and increased parasitoid search time. In combination with Chapter 2, results suggest that aphids can mediate parasitoid-caterpillar interactions through changes in host plants that reduce hornworm survival and alter parasitoid behavior. Chapter 4 addressed how the outcome of interactions that are altered by aphids changed with spatial scale, and found no effect spatial scale on hornworm abundance and parasitism. In this system, aphids alter parasitoid-caterpillar interactions through changes in plant quality that reduce hornworm performance and abundance, and in turn, influence parasitoid attack. This work demonstrates that the outcome of multispecies interactions may not be predictable from pairwise interactions.
  • Thumbnail Image
    Effects of Military Training Activity on Red-cockaded Woodpecker Demography and Behavior---AND---New Territory Formation in the Cooperatively Breeding Red-cockaded Woodpecker
    Perkins, Jennifer L. (Virginia Tech, 2006-08-31)
    The red-cockaded woodpecker (Picoides borealis) is a federally endangered species. As such, populations need to be increased in order to achieve recovery goals outlined by the U.S. Fish and Wildlife Service. My thesis is composed of two chapters that represent opposite sides of this issue. The first chapter investigates whether military training activity negatively affects red-cockaded woodpeckers. Military installations in the southeastern United States contain several of the largest remaining red-cockaded woodpecker populations. Six of the 15 installations harboring these birds are designated primary core populations; thus, population increases on these sites are critical to recovery of the species. However, restrictions on military training activity associated with red-cockaded woodpecker protection are a cause of concern on military installations that sometimes constrains management for population growth. Current restrictions are based on assumptions of potential impacts rather than scientific evidence, so we evaluated two different restriction regimes to test for training activity effects. The second chapter concerns how to induce populations to grow more rapidly through natural processes. As a cooperative breeder, red-cockaded woodpeckers preferentially compete for existing breeding positions and queue in the form of helping or floating to obtain a breeding vacancy, rather than create new territories. I used 20 years of demographic data collected as part of a long-term monitoring study of red-cockaded woodpeckers to investigate mechanisms that stimulate territory creation in this cooperatively breeding species.
  • Thumbnail Image
    'Fixed-axis' magnetic orientation by an amphibian: non-shoreward-directed compass orientation, misdirected homing or positioning a magnetite-based map detector in a consistent alignment relative to the magnetic field?
    Phillips, John B.; Borland, S. Chris; Freake, Michael J.; Brassart, Jacques; Kirschvink, Joseph L. (Company of Biologists Ltd., 2002-12)
    Experiments were carried out to investigate the earlier prediction that prolonged exposure to long-wavelength (>500 nm) light would eliminate homing orientation by male Eastern red-spotted newts Notophthalmus viridescens. As in previous experiments, controls held in outdoor tanks under natural lighting conditions and tested in a visually uniform indoor arena under full-spectrum light were homeward oriented. As predicted, however, newts held under long-wavelength light and tested under either full-spectrum or long-wavelength light (>500 nm) failed to show consistent homeward orientation. The newts also did not orient with respect to the shore directions in the outdoor tanks in which they were held prior to testing. Unexpectedly, however, the newts exhibited bimodal orientation along a more-or-less 'fixed' north-northeast-south-southwest magnetic axis. The orientation exhibited by newts tested under full-spectrum light was indistinguishable from that of newts tested under long-wavelength light, although these two wavelength conditions have previously been shown to differentially affect both shoreward compass orientation and homing orientation. To investigate the possibility that the 'fixed-axis' response of the newts was mediated by a magnetoreception mechanism involving single-domain particles of magnetite, natural remanent magnetism (NRM) was measured from a subset of the newts. The distribution of NRM alignments with respect to the head-body axis of the newts was indistinguishable from random. Furthermore, there was no consistent relationship between the NRM of individual newts and their directional response in the overall sample. However, under full-spectrum, but not long-wavelength, light, the alignment of the NRM when the newts reached the 20 cm radius criterion circle in the indoor testing arena (estimated by adding the NRM alignment measured from each newt to its magnetic bearing) was non-randomly distributed. These findings are consistent with the earlier suggestion that homing newts use the light-dependent magnetic compass to align a magnetite-based 'map detector' when obtaining the precise measurements necessary to derive map information from the magnetic field. However, aligning the putative map detector does not explain the fixed-axis response of newts tested under long-wavelength light. Preliminary evidence suggests that, in the absence of reliable directional information from the magnetic compass (caused by the 90degrees rotation of the response of the magnetic compass under long-wavelength light), newts may resort to a systematic sampling strategy to identify alignment(s) of the map detector that yields reliable magnetic field measurements.
  • Thumbnail Image
    High levels of maternally transferred mercury disrupt magnetic responses of snapping turtle hatchlings (Chelydra serpentina).
    Phillips, John B.; Landler, Lukas (2017-09-30)
    The Earth's magnetic field is involved in spatial behaviours ranging from long-distance migration to nongoal directed behaviours, such as spontaneous magnetic alignment (SMA). Mercury is a harmful pollutant most often generated from anthropogenic sources that can bio-accumulate in animal tissue over a lifetime.We compared SMA of hatchling snapping turtles from mothers captured at reference (i.e., low mercury) and mercury contaminated sites. Reference turtles showed radio frequency-dependent SMA along the north-south axis, consistent with previous studies of SMA, while turtles with high levels of maternally inherited mercury failed to show consistent magnetic alignment. In contrast, there was no difference between reference and mercury exposed turtles on standard performance measures. The magnetic field plays an important role in animal orientation behaviour and may also help to integrate spatial information from a variety of sensory modalities. As a consequence, mercury may compromise the performance of turtles in a wide variety of spatial tasks. Future research is needed to determine the threshold for mercury effects on snapping turtles, whether mercury exposure compromises spatial behaviour of adult turtles, and whether mercury has a direct effect on the magnetoreception mechanism(s) that mediate SMA or a more general effect on the nervous system.
  • Thumbnail Image
    Intrabrood Dominance Hierarchies in Juvenile Red-Cockaded Woodpeckers: The Role of Early Social Environment On Post-Fledging Survival and Natal Dispersal
    Ragheb, Erin Lorraine Hewett (Virginia Tech, 2011-09-06)
    Competition among individuals over shared resources reveals asymmetries in quality resulting in the formation of dominance hierarchies. These hierarchies act as a mechanism for social selection by partitioning resources among group-living animals. The following chapters describe my dissertation research which investigates the factors contributing to competitive asymmetries among broodmates as well as the short- and long-term consequences of the early social environment for the cooperatively breeding red-cockaded woodpecker (Picoides borealis). My research revealed that fledgling red-cockaded woodpeckers form male-biased, linear dominance hierarchies. Among fledgling males,, high relative nestling condition strongly predicted fledgling dominance, and this condition–rank relationship persisted through independence. Male nestlings are slightly larger and heavier than females; however, the sexual size dimorphism in mass is only present in mixed-sex broods, suggesting that the subtle structural size advantage gives males a competitive advantage over their sisters. Conflict rates among siblings increased with decreasing targeted feeding rates, and dominant fledglings were able to secure more food from provisioning adults through scramble competition. First-year survival favored males over females and dominant males over subordinates. Females were more dispersive overall than males, and subordinate males were more likely to disperse than dominants. The social environment prior to fledging influenced male dispersal decisions and subordinates delayed dispersal in the spring in situations where all dominants died over the winter. The probability of delayed dispersal in females was higher for females raised without brood-mates in one of two populations included in a long-term demographic data analysis. The availability of breeding vacancies may explain the differences in female dispersal behavior according to social environment between these populations. This research contributes to a greater understanding of the relative contribution of intrinsic benefits versus extrinsic constraints as an influence on delayed dispersal decisions in red-cockaded woodpeckers. Inter- and intra-sexual social rank is correlated with individual access to natal food resources and the probability of first-year survival. The intrabrood variation in dispersal strategies driven by social rank is sufficient to regularly produce both dispersal strategies among males and provides additional support that delaying natal dispersal is the preferred strategy for males in this system.
  • Thumbnail Image
    Involvement of the Avian Dorsal Thalamic Nuclei in Homing Pigeon Navigation
    Jorge, Paulo E.; Pinto, Belmiro V.; Bingman, Verner P.; Phillips, John B. (Frontiers, 2017-11-02)
    The navigational ability of birds has been a focus of popular and scientific interest for centuries, but relatively little is known about the neuronal networks that support avian navigation. In the brain, regions like the piriform cortex, olfactory bulbs, hippocampal formation, vestibular nuclei, and the wulst, are among the brain regions often discussed as involved in avian navigation. However, despite large literature showing a prominent role of some anterior and dorsal thalamic nuclei in mammalian spatial navigation, little is known about the role of the thalamus in avian navigation. Here, we analyzed a possible role of the dorsal anterior thalamic nuclei in avian navigation by combining olfactory manipulations during the transport of young homing pigeons to a release site and c-Fos immunohistochemistry for the mapping brain activity. The results reveal that odor modulated neurons in the avian dorsolateral lateral (DLL) subdivision of the anterior thalamic nuclei are actively involved in processing outward journey, navigational information. Outward journey information is used by pigeons to correctly determine the homeward direction. DLL participation in acquiring path-based information, and its modulation by olfactory exposure, broadens our understanding of the neural pathways underlying avian navigation.
  • Thumbnail Image
    Life History Divergence & Tidal Salt Marsh Adaptations of the Coastal Plain Swamp Sparrow
    Olsen, Brian J. (Virginia Tech, 2007-01-05)
    Adaptation to local environments via natural selection is a powerful mechanism for population divergence and likely one of the primary causes of speciation. To understand how specific habitats shape local adaptation, it is helpful to study closely-related populations from widely differing ecosystems that have not had sufficient time to diverge by genetic drift. Throughout the following chapters I examine the distribution of morphological, behavioral, and reproductive phenotypes within and between two subspecies of the swamp sparrow. These two populations, the tidal salt marsh endemic Melospiza georgiana nigrescens and the nominant inland subspecies, M. g. georgiana were incompletely isolated from each other following the retreat of the Wisconsin glaciation. Since that time the increased nest predation, temperature, season length, salinity and tidal flow of the coastal marshes relative to inland wetlands has resulted in a number of adaptations among coastal sparrows due to natural selection, sexual selection, and phenotypic plasticity. Specifically I examine the habitat preferences of the coastal plain swamp sparrow, the difference in clutch size between the two subspecies, the rates of extrapair fertilization relative to male quality, the ecosystem-specific interactions between natural and sexual selection on plumage badges, and the role of conspecific attraction in nest placement. The environmental differences of the tidal salt marsh have played strong roles in the local adaptation and divergence of coastal plain swamp sparrows from their freshwater ancestors. Many of these divergent mechanisms may be similar among other tidal marsh endemics, although some (especially those related to sexual selection) may be specific to the swamp sparrow. In general, however, we see that the added environmental challenges of tidal ecosystems strongly alter selection regimes on a terrestrial vertebrate inhabiting this dynamic ecotone. The swamp sparrow system can further increase our understanding of how the interplay between environmental resources, sexual selection, and natural selection affects the local adaptations leading to evolutionary divergence.
  • Thumbnail Image
    Magnetic Compass Orientation in the European Eel
    Durif, Caroline M. F.; Browman, Howard I.; Phillips, John B.; Skiftesvik, Anne Berit; Vollestad, L, Asbjom; Stockhausen, Hans H. (PLOS, 2013-03-15)
    European eel migrate from freshwater or coastal habitats throughout Europe to their spawning grounds in the Sargasso Sea. However, their route (, 6000 km) and orientation mechanisms are unknown. Several attempts have been made to prove the existence of magnetoreception in Anguilla sp., but none of these studies have demonstrated magnetic compass orientation in earth-strength magnetic field intensities. We tested eels in four altered magnetic field conditions where magnetic North was set at geographic North, South, East, or West. Eels oriented in a manner that was related to the tank in which they were housed before the test. At lower temperature (under 12uC), their orientation relative to magnetic North corresponded to the direction of their displacement from the holding tank. At higher temperatures (12–17uC), eels showed bimodal orientation along an axis perpendicular to the axis of their displacement. These temperature-related shifts in orientation may be linked to the changes in behavior that occur between the warm season (during which eels are foraging) and the colder fall and winter (during which eels undertake their migrations). These observations support the conclusion that 1. eels have a magnetic compass, and 2. they use this sense to orient in a direction that they have registered moments before they are displaced. The adaptive advantage of having a magnetic compass and learning the direction in which they have been displaced becomes clear when set in the context of the eel’s seaward migration. For example, if their migration is halted or blocked, as it is the case when environmental conditions become unfavorable or when they encounter a barrier, eels would be able to resume their movements along their old bearing when conditions become favorable again or when they pass by the barrier.
  • Thumbnail Image
    Magnetoreception in the wood mouse (Apodemus sylvaticus): influence of weak frequency-modulated radio frequency fields
    Malkemper, E. Pascal; Eder, Stephan H. K.; Begall, Sobine; Phillips, John B.; Winklhofer, Michael; Hart, Vlastimil; Burda, Hynek (Nature Publishing Group, 2015-04-29)
    The mammalian magnetic sense is predominantly studied in species with reduced vision such as mole-rats and bats. Far less is known about surface-dwelling (epigeic) rodents with well-developed eyes. Here, we tested the wood mouse Apodemus sylvaticus for magnetoreception using a simple behavioural assay in which mice are allowed to build nests overnight in a visually symmetrical, circular arena. The tests were performed in the ambientmagnetic field or in a field rotated by 906.When plotted with respect tomagnetic north, the nests were bimodally clustered in the northern and southern sectors, clearly indicating that the animals used magnetic cues. Additionally,micewere tested in the ambientmagnetic field with a superimposed radio frequencymagnetic field of the order of 100 nT.Wood mice exposed to a 0.9 to 5 MHz frequency sweep changed their preference from north-south to east-west. In contrast tobirds, however, a constant frequency field tuned to the Larmor frequency (1.33 MHz) had no effect on mouse orientation. In sum, we demonstratedmagnetoreception in wood mice and provide first evidence for a radical-pair mechanism in a mammal.
  • Thumbnail Image
    Mechanisms of Compass Orientation in C57BL/6 Laboratory Mice
    Edgar, Nicole M. (Virginia Tech, 2004-02-04)
    Compass orientation or menotaxis is defined as the ability to orient at a specific angle relative to a directional cue. Cues used for compass orientation include the sun, stars, moon, geomagnetic field and polarized light. While there is evidence in a variety of organisms for compass orientation, the ability of mammals to use cues for compass orientation has been relatively unexplored. The goal of this research was to explore whether laboratory mice could use either magnetic or auditory cues for compass orientation. The results indicate that mice are able to learn to position their nest using a magnetic compass. The development of a magnetic compass assay in laboratory mice will allow the investigation of the mechanism of magnetic compass orientation in mammals, a goal that has been unattainable to this point.In addition, this research has provided preliminary evidence that mice are able to learn to position their nests using an auditory compass. While there is evidence in several organisms for place navigation using auditory cues (i.e. the ability to locate a specific spatial position using auditory cues), this is the first evidence in any organism for an auditory compass (i.e. the ability to calculate a directional heading relative to an auditory cue).In conclusion, both experiments provide evidence for specialized compass systems in mice and suggest that further research is necessary to fully understand the role of these systems in the behavioral ecology of mice.
  • Thumbnail Image
    Mercury's Effects on Feather Color and Fitness of Eastern Bluebirds
    Langer, Elizabeth Anne (Virginia Tech, 2008-07-18)
    Mercury levels in the environment have been increasing steadily since the industrial age. Mercury can have deleterious effects on a variety of types of tissue in vertebrates; however, effects of mercury in some animals and/or tissues may be masked by animal's compensatory mechanisms. It is still widely unknown how these rising levels are affecting wildlife, specifically Eastern Bluebirds (Sialia sialis). The goal of this research was to explore a novel method through which mercury may be affecting the fitness of Eastern Bluebirds exposed to varying levels of environmental mercury. Birds on contaminated and reference sites were monitored for two years and various fitness measures were recorded. Four different feather types were also taken to measure mercury's effects on structural coloration. This is the first study to show that mercury in feathers may impact plumage coloration through three possible mechanisms: (1) binding to the sulfide bonds in keratin causing a change in the regular spacing that produces the blue color, (2) inhibition of melanin synthesis, or (3) impacts on the overall health of individuals resulting in lower investment in color production. The overall effects of mercury on bluebirds' fitness and their offspring varied based on adult sex; females with high feather mercury had fewer eggs, and males with high blood mercury fledged fewer offspring. In conclusion, these studies showed a novel way in which mercury may impact birds in an exposed environment as well as ways in which mercury may affect fitness based on sex of the individual and time of exposure.
  • Thumbnail Image
    The Mouse Magnetic Compass
    Arnold, Tessa Jean (Virginia Tech, 2015-06-26)
    All five classes of vertebrates use the geomagnetic field for spatial orientation. The geomagnetic field can be used to derive both 'map' and 'compass' information. There is evidence for two different mechanisms used to sense the magnetic field, the radical pair mechanism (RPM) and the magnetite based mechanism (MBM). C57BL/6 laboratory mice can rely on directional information from the magnetic field to position their nests and to solve a water maze task. The primary objective of this research was to characterize the magnetic compass of C57BL/6 laboratory mice in the plus water maze task. These experiments explored sources of variation in magnetic responses and investigated the underlying magnetic compass orientation mechanism in C57BL/6 mice. The results provide evidence that the mouse magnetic compass is sensitive to low-level radiofrequency fields, consistent with the use of the RPM for magnetic orientation. Surprisingly, the results also suggest that C57BL/6 mice have a polarity sensitive compass, consistent with the use of a MBM for magnetic orientation. These experiments confirm that mice have a specialized magnetic compass sense. Furthermore, despite the controlled environment in which these laboratory experiments were conducted, a variety of factors can increase the variability in the response. Future experiments are needed to further characterize the mouse magnetic compass, as there is a possibility of a hybrid magnetic response where both magnetoreception mechanisms could be used for spatial orientation.
  • Thumbnail Image
    Photolyase: Its Damaged DNA Substrate and Amino Acid Radical Formation During Photorepair
    Hurley, E. Kenneth (Virginia Tech, 2005-01-06)
    Ultraviolet light damages genomic material by inducing the formation of covalent bonds between adjacent pyrimidines. Cis-syn cyclobutane pyrimidine dimers (CPD)constitute the most abundant primary lesion in DNA. Photolyase, a light-activated enzyme, catalytically repairs these lesions. Although many steps in the photolyase-mediated repair process have been mapped, details of the mechanism remain cryptic. Difference FT-IR spectroscopy was employed to obtain new mechanistic information about photorepair. Purified oligonucleotides, containing a central diuracil, dithymidine, or cyclobutane thymidine dimer, were monitored using vibrational methods. Construction of difference infrared data between undamaged and damaged DNA permitted examination of nucleic acid changes upon formation of the CPD lesion; these experiments indicated that C=O and C-H frequencies can be used as markers for DNA damage. Furthermore, in purified photolyase containing isotopically-labeled aromatic amino acids, we observed that tryptophan residues in photolyase underwent structural changes during photorepair. These data indicate that electron transfer during DNA repair occurs through-bond, and that redox-active, aromatic residues form the pathway for electron transfer.
  • Thumbnail Image
    Rapid Learning of Magnetic Compass Direction by C57BL/6 Mice in a 4-Armed 'Plus' Water Maze
    Phillips, John B.; Youmans, Paul W.; Muheim, Rachel; Sloan, Kelly A.; Landler, Lukas; Painter, Michael Scott; Anderson, Christopher R. (PLOS, 2013-08-30)
    Magnetoreception has been demonstrated in all five vertebrate classes. In rodents, nest building experiments have shown the use of magnetic cues by two families of molerats, Siberian hamsters and C57BL/6 mice. However, assays widely used to study rodent spatial cognition (e.g. water maze, radial arm maze) have failed to provide evidence for the use of magnetic cues. Here we show that C57BL/6 mice can learn the magnetic direction of a submerged platform in a 4-armed (plus) water maze. Naïve mice were given two brief training trials. In each trial, a mouse was confined to one arm of the maze with the submerged platform at the outer end in a predetermined alignment relative to magnetic north. Between trials, the training arm and magnetic field were rotated by 180° so that the mouse had to swim in the same magnetic direction to reach the submerged platform. The directional preference of each mouse was tested once in one of four magnetic field alignments by releasing it at the center of the maze with access to all four arms. Equal numbers of responses were obtained from mice tested in the four symmetrical magnetic field alignments. Findings show that two training trials are sufficient for mice to learn the magnetic direction of the submerged platform in a plus water maze. The success of these experiments may be explained by: (1) absence of alternative directional cues (2), rotation of magnetic field alignment, and (3) electromagnetic shielding to minimize radio frequency interference that has been shown to interfere with magnetic compass orientation of birds. These findings confirm that mice have a well-developed magnetic compass, and give further impetus to the question of whether epigeic rodents (e.g., mice and rats) have a photoreceptor-based magnetic compass similar to that found in amphibians and migratory birds.