Browsing by Author "Yan, Zhen"
Now showing 1 - 7 of 7
Results Per Page
Sort Options
- AMPK-mediated potentiation of GABAergic signalling drives hypoglycaemia-provoked spike-wave seizuresSalvati, Kathryn A.; Ritger, Matthew L.; Davoudian, Pasha A.; O'Dell, Finnegan; Wyskiel, Daniel R.; Souza, George M. P. R.; Lu, Adam C.; Perez-Reyes, Edward; Drake, Joshua C.; Yan, Zhen; Beenhakker, Mark P. (Oxford University Press, 2022-07-29)Metabolism regulates neuronal activity and modulates the occurrence of epileptic seizures. Here, using two rodent models of absence epilepsy, we show that hypoglycaemia increases the occurrence of spike-wave seizures. We then show that selectively disrupting glycolysis in the thalamus, a structure implicated in absence epilepsy, is sufficient to increase spike-wave seizures. We propose that activation of thalamic AMP-activated protein kinase, a sensor of cellular energetic stress and potentiator of metabotropic GABA(B)-receptor function, is a significant driver of hypoglycaemia-induced spike-wave seizures. We show that AMP-activated protein kinase augments postsynaptic GABA(B)-receptor-mediated currents in thalamocortical neurons and strengthens epileptiform network activity evoked in thalamic brain slices. Selective thalamic AMP-activated protein kinase activation also increases spike-wave seizures. Finally, systemic administration of metformin, an AMP-activated protein kinase agonist and common diabetes treatment, profoundly increased spike-wave seizures. These results advance the decades-old observation that glucose metabolism regulates thalamocortical circuit excitability by demonstrating that AMP-activated protein kinase and GABA(B)-receptor cooperativity is sufficient to provoke spike-wave seizures. Hypoglycaemia is an established trigger for absence seizures. Salvati et al. investigate the mechanism underlying this link, and show that activation of thalamic AMPK-a cellular sensor of intracellular ATP-promotes spike-wave activity in a rat model of absence epilepsy by potentiating GABA-B receptor signalling.
- Ear Deformations Give Bats a Physical Mechanism for Fast Adaptation of Ultrasonic Beam PatternsGao, Li; Balakrishnan, Sreenath; He, Weikai; Yan, Zhen; Müller, Rolf (American Physical Society, 2011-11-14)A large number of mammals, including humans, have intricate outer ear shapes that diffract incoming sound in a direction-and frequency-specific manner. Through this physical process, the outer ear shapes encode sound-source information into the sensory signals from each ear. Our results show that horseshoe bats could dynamically control these diffraction processes through fast nonrigid ear deformations. The bats' ear shapes can alter between extreme configurations in about 100 ms and thereby change their acoustic properties in ways that would suit different acoustic sensing tasks.
- Endurance Exercise Training Mitigates Diastolic Dysfunction in Diabetic Mice Independent of Phosphorylation of Ulk1 at S555Guan, Yuntian; Zhang, Mei; Lacy, Christie; Shah, Soham; Epstein, Frederick H.; Yan, Zhen (MDPI, 2024-01-03)Millions of diabetic patients suffer from cardiovascular complications. One of the earliest signs of diabetic complications in the heart is diastolic dysfunction. Regular exercise is a highly effective preventive/therapeutic intervention against diastolic dysfunction in diabetes, but the underlying mechanism(s) remain poorly understood. Studies have shown that the accumulation of damaged or dysfunctional mitochondria in the myocardium is at the center of this pathology. Here, we employed a mouse model of diabetes to test the hypothesis that endurance exercise training mitigates diastolic dysfunction by promoting cardiac mitophagy (the clearance of mitochondria via autophagy) via S555 phosphorylation of Ulk1. High-fat diet (HFD) feeding and streptozotocin (STZ) injection in mice led to reduced endurance capacity, impaired diastolic function, increased myocardial oxidative stress, and compromised mitochondrial structure and function, which were all ameliorated by 6 weeks of voluntary wheel running. Using CRISPR/Cas9-mediated gene editing, we generated non-phosphorylatable Ulk1 (S555A) mutant mice and showed the requirement of p-Ulk1at S555 for exercise-induced mitophagy in the myocardium. However, diabetic Ulk1 (S555A) mice retained the benefits of exercise intervention. We conclude that endurance exercise training mitigates diabetes-induced diastolic dysfunction independent of Ulk1 phosphorylation at S555.
- Identification of a novel mitochondrial uncoupler that does not depolarize the plasma membraneKenwood, Brandon M.; Weaver, Janelle L.; Bajwa, Amandeep; Poon, Ivan K.; Byrne, Frances L.; Murrow, Beverley A.; Calderone, Joseph A.; Huang, Liping; Divakaruni, Ajit S.; Tomsig, Jose L.; Okabe, Kohki; Lo, Ryan H.; Coleman, G. Cameron; Columbus, Linda; Yan, Zhen; Saucerman, Jeffrey J.; Smith, Jeffrey S.; Holmes, Jeffrey W.; Lynch, Kevin R.; Ravichandran, Kodi S.; Uchiyama, Seiichi; Santos, Webster L.; Rogers, George W.; Okusa, Mark D.; Bayliss, Douglas A.; Hoehn, Kyle L. (Elsevier, 2013)Dysregulation of oxidative phosphorylation is associated with increased mitochondrial reactive oxygen species production and some of the most prevalent human diseases including obesity, cancer, diabetes, neurodegeneration, and heart disease. Chemical 'mitochondrial uncouplers' are lipophilic weak acids that transport protons into the mitochondrial matrix via a pathway that is independent of ATP synthase, thereby uncoupling nutrient oxidation from ATP production. Mitochondrial uncouplers also lessen the proton motive force across the mitochondrial inner membrane and thereby increase the rate of mitochondrial respiration while decreasing production of reactive oxygen species. Thus, mitochondrial uncouplers are valuable chemical tools that enable the measurement of maximal mitochondrial respiration and they have been used therapeutically to decrease mitochondrial reactive oxygen species production. However, the most widely used protonophore uncouplers such as carbonyl cyanide p-trifluoromethoxyphenylhydrazone (FCCP) and 2,4-dinitrophenol have off-target activity at other membranes that lead to a range of undesired effects including plasma membrane depolarization, mitochondrial inhibition, and cytotoxicity. These unwanted properties interfere with the measurement of mitochondrial function and result in a narrow therapeutic index that limits their usefulness in the clinic. To identify new mitochondrial uncouplers that lack off-target activity at the plasma membrane we screened a small molecule chemical library. Herein we report the identification and validation of a novel mitochondrial protonophore uncoupler (2-fluorophenyl){6-[(2-fluorophenyl)amino](1,2,5-oxadiazolo[3,4-e]pyrazin-5-yl)}amine, named BAM15, that does not depolarize the plasma membrane. Compared to FCCP, an uncoupler of equal potency, BAM15 treatment of cultured cells stimulates a higher maximum rate of mitochondrial respiration and is less cytotoxic. Furthermore, BAM15 is bioactive in vivo and dose-dependently protects mice from acute renal ischemic-reperfusion injury. From a technical standpoint, BAM15 represents an effective new tool that allows the study of mitochondrial function in the absence of off-target effects that can confound data interpretation. From a therapeutic perspective, BAM15-mediated protection from ischemia-reperfusion injury and its reduced toxicity will hopefully reignite interest in pharmacological uncoupling for the treatment of the myriad of diseases that are associated with altered mitochondrial function.
- Mitochondria-localized AMPK responds to local energetics and contributes to exercise and energetic stress-induced mitophagyDrake, Joshua C.; Wilson, Rebecca J.; Laker, Rhianna C.; Guan, Yuntian; Spaulding, Hannah R.; Nichenko, Anna S.; Shen, Wenqing; Shang, Huayu; Dorn, Maya; Huang, Kian; Zhang, Mei; Bandara, Aloka B.; Brisendine, Matthew H.; Kashatus, Jennifer A.; Sharma, Poonam R.; Young, Alexander; Gautam, Jitendra; Cao, Ruofan; Wallrabe, Horst; Chang, Paul A.; Wong, Michael; Desjardins, Eric M.; Hawley, Simon A.; Christ, George J.; Kashatus, David F.; Miller, Clint L.; Wolf, Matthew J.; Periasamy, Ammasi; Steinberg, Gregory R.; Hardie, D. Grahame; Yan, Zhen (National Academy of Sciences, 2021-09-14)Mitochondria form a complex, interconnected reticulum that is maintained through coordination among biogenesis, dynamic fission, and fusion and mitophagy, which are initiated in response to various cues to maintain energetic homeostasis. These cellular events, which make up mitochondrial quality control, act with remarkable spatial precision, but what governs such spatial specificity is poorly understood. Herein, we demonstrate that specific isoforms of the cellular bioenergetic sensor, 5′ AMP-activated protein kinase (AMPKα1/ α2/β2/γ1), are localized on the outer mitochondrial membrane, referred to as mitoAMPK, in various tissues in mice and humans. Activation of mitoAMPK varies across the reticulum in response to energetic stress, and inhibition of mitoAMPK activity attenuates exercise-induced mitophagy in skeletal muscle in vivo. Discovery of a mitochondrial pool of AMPK and its local importance for mitochondrial quality control underscores the complexity of sensing cellular energetics in vivo that has implications for targeting mitochondrial energetics for disease treatment.
- Multimodal Optical Interfaces Enabled by Multiresonant Plasmonics for Bio-NanophotonicsNie, Meitong (Virginia Tech, 2025-01-02)Engineering tools at the nano-bio interface have enabled transformative advances in molecular diagnostics, therapeutic monitoring, and cellular manipulation. However, challenges remain in achieving continuous real-time sensing, intracellular probing, and controlled actuation within an integrated, multifunctional platform. Nanotechnology, particularly through localized surface plasmons (LSPs), addresses these challenges by leveraging radiative decay for enhanced optical sensing (e.g., SERS) and non-radiative decay for nanoscale actuation (e.g., photothermal effects and vapor nanobubbles). Conventional plasmonic systems, however, are limited in wavelength multiplexing, versatility, and spatial mode overlap. To overcome these shortcomings, this dissertation presents a wavelength-multiplexed multimodal optical nano-bio interfaces enabled by multiresonant plasmonic architectures. These systems combine advanced plasmonic designs with intimate bio-nano interfaces, achieving multifunctionality across a broad spectral range for biochemical sensing and nanoscale actuation. The core platform is built on metal-insulator-metal (MIM) plasmonic nanolaminate nanopillar arrays (NLNPAs), which provide tunable multiresonant responses, nanoscale mode overlap, and an intimate bio-nano interface. For biochemical sensing, the multiband plasmonic resonances enable broadband surface-enhanced Raman scattering (SERS), offering high sensitivity and molecular specificity across a wide spectral range. This capability facilitates high-dimensional molecular fingerprinting, providing insights into spatial-temporal biochemical processes. Additionally, the platform enhances nonlinear optical processes, such as second- and third-harmonic generation (SHG/THG), enabling broadband, label-free sensing and bio-actuation with tunable performance. Beyond sensing, the multiresonant plasmonic interface supports precise nanoscale actuation through femtosecond laser-induced vapor nanobubbles. This approach enables highly localized, minimally invasive membrane permeabilization—optoporation—facilitating intracellular biochemical sensing and molecular delivery with nanoscale precision. Such capabilities hold significant promise for applications in bio-nanophotonics, targeted drug delivery, and cellular biochemical analysis, offering a pathway for advancing molecular diagnostics, minimally invasive therapies, and precise nanosurgery. As a proof-of-concept, a vapor nanobubble-enabled regenerative SERS sensing platform is demonstrated for continuous, wavelength-multiplexed biochemical monitoring. By combining photothermal nanocavitation with plasmonic SERS hotspots, the system achieves ultrasensitive molecular detection in protein-rich biofluids, such as bacterial biofilms associated with chronic wounds. This platform allows real-time monitoring of biochemical evolution in complex biointerfaces, offering a robust tool for continuous molecular fingerprinting in dynamic biological systems. Collectively, these advancements establish the wavelength-multiplexed multimodal optical nano-bio interface as a versatile platform that bridges the gap between nanoscale optical engineering and biological applications. By enabling simultaneous spatial-temporal sensing and actuation with nanoscale precision, this work paves the way for transformative applications in molecular diagnostics, real-time therapeutic monitoring, and cellular biochemical analysis. Future efforts toward portable instrumentation and integration with wearable or implantable technologies will further enhance the platform's potential for non-invasive, real-time monitoring in clinical and healthcare settings, driving forward the future of bio-nanophotonics.
- Temporal dynamics of the multi-omic response to endurance exercise trainingMoTrPAC Study Group; Yan, Zhen (Nature Research, 2024-05-01)Regular exercise promotes whole-body health and prevents disease, but the underlying molecular mechanisms are incompletely understood. Here, the Molecular Transducers of Physical Activity Consortium4 profiled the temporal transcriptome, proteome, metabolome, lipidome, phosphoproteome, acetylproteome, ubiquitylproteome, epigenome and immunome in whole blood, plasma and 18 solid tissues in male and female Rattus norvegicus over eight weeks of endurance exercise training. The resulting data compendium encompasses 9,466 assays across 19 tissues, 25 molecular platforms and 4 training time points. Thousands of shared and tissue specific molecular alterations were identified, with sex differences found in multiple tissues. Temporal multi-omic and multi-tissue analyses revealed expansive biological insights into the adaptive responses to endurance training, including widespread regulation of immune, metabolic, stress response and mitochondrial pathways. Many changes were relevant to human health, including non-alcoholic fatty liver disease, inflammatory bowel disease, cardiovascular health and tissue injury and recovery. The data and analyses presented in this study will serve as valuable resources for understanding and exploring the multi-tissue molecular effects of endurance training and are provided in a public repository (https://motrpac-data.org/).