Browsing by Author "Zhang, Bo"

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    2020 Virginia Tech Eastern Shore AREC Virtual Research Field Day
    Reiter, Mark S.; Deitch, Ursula; Pittman, Theresa; Flessner, Michael; Rideout, Steven L.; Zhang, Bo; Vallotton, Amber; Thomason, Wade E.; Wolters, Bethany; Templeton, Jenny; Lawrence, Cris; Strawn, Laura K.; Neill, Clinton L.; Sutton, Kemper; Britt, Kadie; Boyle, Sean; Pagini, Mika; Kuhar, Thomas P. (Virginia Cooperative Extension, 2020-08-18)
    Eastern Shore Agricultural Research and Extension Center Virtual Research Field day includes various presentations and publications of the authors’ above, which are each linked in the body of the publication
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    3D Hybrid of Layered MoS2/Nitrogen-Doped Graphene Nanosheet Aerogels: An Effective Catalyst for Hydrogen Evolution in Microbial Electrolysis Cells
    Hou, Yang; Zhang, Bo; Wen, Zhenhai; Cui, Shumao; Guo, Xiaoru; He, Zhen; Chen, Junhong (The Royal Society of Chemistry, 2014-06-18)
    Microbial fuel cells (MFCs) have been conceived and intensively studied as a promising technology to achieve sustainable wastewater treatment. However, doubts and debates arose in recent years regarding the technical and economic viability of this technology on a larger scale and in a real-world applications. Hence, it is time to think about and examine how to recalibrate this technology's role in a future paradigm of sustainable wastewater treatment. In the past years, many good ideas/approaches have been proposed and investigated for MFC application, but information is scattered. Various review papers were published on MFC configuration, substrates, electrode materials, separators and microbiology but there is lack of critical thinking and systematic analysis of MFC application niche in wastewater treatment. To systematically formulate a strategy of (potentially) practical MFC application and provide information to guide MFC development, this perspective has critically examined and discussed the problems and challenges for developing MFC technology, and identified a possible application niche whereby MFCs can be rationally incorporated into the treatment process. We propose integration of MFCs with other treatment technologies to form an MFC-centered treatment scheme based on thoroughly analyzing the challenges and opportunities, and discuss future efforts to be made for realizing sustainable wastewater treatment.
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    Analysis of Shoot Architecture Traits in Edamame Reveals Potential Strategies to Improve Harvest Efficiency
    Dhakal, Kshitiz; Zhu, Qian; Zhang, Bo; Li, Mao; Li, Song (2021-03-03)
    Edamame is a type of green, vegetable soybean and improving shoot architecture traits for edamame is important for breeding of high-yield varieties by decreasing potential loss due to harvesting. In this study, we use digital imaging technology and computer vision algorithms to characterize major traits of shoot architecture for edamame. Using a population of edamame PIs, we seek to identify underlying genetic control of different shoot architecture traits. We found significant variations in the shoot architecture of the edamame lines including long-skinny and candle stick-like structures. To quantify the similarity and differences of branching patterns between these edamame varieties, we applied a topological measurement called persistent homology. Persistent homology uses algebraic geometry algorithms to measure the structural similarities between complex shapes. We found intriguing relationships between the topological features of branching networks and pod numbers in our plant population, suggesting combination of multiple topological features contribute to the overall pod numbers on a plant. We also identified potential candidate genes including a lateral organ boundary gene family protein and a MADS-box gene that are associated with the pod numbers. This research provides insight into the genetic regulation of shoot architecture traits and can be used to further develop edamame varieties that are better adapted to mechanical harvesting.
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    Assessing Consumer Preferences and Intentions to Buy Edamame Produced in the US
    Carneiro, Renata C. V.; Drape, Tiffany A.; Neill, Clinton L.; Zhang, Bo; O'Keefe, Sean F.; Duncan, Susan E. (Frontiers, 2022-01-18)
    Due to the growing consumer demand for edamame (vegetable soybean) in the U.S., the domestic production of this specialty crop has been promoted in several Mid-Atlantic and Southeast states as an economically attractive alternative to replace the decreasing tobacco production. For the edamame agrobusiness to be successful in the U.S., consumer studies are as needed as new commercial cultivars that are developed for the U.S. environment. Thus, in this exploratory study, we investigated consumers' preferences and intentions to buy edamame products in the U.S., especially domestic products. Data was collected through a web-based survey distributed through Qualtrics(XM) and a convenience sampling method was chosen. Volunteers who completed the survey (N = 309) were 82% female, 57% residents of the South Atlantic area, and 79% daily consumers of vegetables. Survey respondents had a positive attitude toward domestically produced vegetables and valued supporting U.S. producers. Overall, domestically grown, in-shell edamame products were preferred compared to shelled edamame or imported products. Regarding future purchasing, respondents exhibited higher intention to buy fresh edamame relative to frozen edamame. Additionally, respondents considered price, availability, and familiarity with the vegetable brand, respectively, as the most important factors in their decision-making process to buy edamame products. Our study confirmed there is a market potential for domestically produced edamame and it also provides valuable information to support future studies, production decisions, and the growth of the edamame agrobusiness in the U.S.
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    Biofortification: Creating a Healthier Food Supply
    Singer, William M.; Lee, David; Zhang, Bo (Virginia Cooperative Extension, 2020-11-30)
    Humans and livestock require a broad range of nutrients to maintain a healthy diet. However, the lack of diversity in diets due to price, geography, and availability makes it difficult to create a well-rounded food supply from staple crops. Biofortification is the process of improving the nutritional quality of food and feed through management practices, plant breeding, and genetic modification. The history, types, and implications of biofortification are discussed with an emphasis on producer, livestock, and human health considerations.
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    Chemical Compositions of Edamame Beans and Valorization of Edamame Shells
    Yu, Dajun (Virginia Tech, 2023-01-23)
    Edamame is becoming more popular in the U.S. due to its high nutritional value and potential health benefits. However, more than 70% of edamame is imported from outside of the U.S. Therefore, developing elite edamame genotypes is critically desirable to increase the domestic production of edamame in the U.S. Genotype, planting location, and harvest time play essential roles in the chemical composition of edamame, which further decide edamame's nutritional value and sensory characteristics. Therefore, the first goal of this study is to comprehensively evaluate the chemical composition of edamame genotypes grown in different locations. Ten selected edamame genotypes were grown in three locations in the U.S. - Whitethorne, Virginia (VA), Little Rock, Arkansas (AR) and Painter, VA. Sugars, alanine, protein, oil, neutral detergent fiber (NDF), starch, ash, and moisture contents, were comprehensively analyzed. The results showed that location had significant effects on all chemical components of edamame with p < 0.05. Compared to Painter and Little Rock, genotypes planted in Whitethorne had higher averaged free sucrose, fructose, glucose, raffinose, stachyose, and starch contents and total sweetness. The highest crude protein and oil contents were found on edamame planted in Painter, while Little Rock produced edamame with the highest free alanine, ash, and moisture contents. Genotype significantly affected chemical compositions except for NDF and raffinose. Therefore, planting location and edamame genotype should be considered when producing elite edamame for the U.S. market. Chemical composition changes with the development of edamame; therefore, harvest time is essential for harvesting high-quality edamame. The second objective of this study is to quantify the changes in both physical and chemical properties of edamame over bean development and apply a combined spectroscopy and machine learning (ML) technique to help determine the optimal harvest time. Physical and chemical properties were analyzed for edamame harvested at R5 (beginning seed), R6 (full seed), and R7 (beginning maturity) growth stages, and the spectral reflectance (360 – 740 nm) of edamame pods was measured using a handheld spectrophotometer. The samples harvested at different stages were labeled as 'early,' 'ready,' and 'late.' At R6, pod/bean weight and pod thickness reached the peak and then stayed stable, while sugar, alanine, starch, and glycine also peaked at R6 but declined afterward. The spectra-based ML method had high accuracy (0.95) when classifying 'early' and 'late' edamame, and the accuracy was 0.87 for classifying 'early' and 'ready' edamame. These results indicated that this spectra-based ML method could determine the optimal harvest time of edamame. Food waste and loss not only lead to economic loss but also significant greenhouse gas emissions. With edamame food/snack production increasing, edamame shells, the low-value byproduct from this processing, will potentially threaten the environment. Similar to other food processing byproducts, edamame shell is rich in dietary fiber (DF). However, the high concentration of insoluble dietary fiber (IDF) limits its application as a food additive. Therefore, extraction/modification processes are needed to convert IDF to soluble dietary fiber (SDF) and improve the properties of edamame shell-derived DF. Ball milling is one of the most efficient techniques to break down biomaterials into sub-micro-level particles. Citric acid, as a natural and safe food additive, can help break down cell walls and improve the dissolution of SDF by ionizing the hydrogen ions with carboxyl groups. Therefore, the third objective of this study is to develop a process that combines ball milling and citric acid treatments to produce SDF from edamame shells. We investigated different treatment parameters, including different citric acid concentrations, treatment temperatures and time, and the application of ball milling. To determine if the combined treatment can potentially improve the properties of the produced SDFs, we characterized the physicochemical, morphological, structural, rheological, thermal, and functional properties of SDFs produced at different conditions. The results showed that the highest SDF yield (19.5%) was found when the edamame shells were pretreated by a ball mill. In addition, the combined citric acid and ball milling treatment altered several properties of the produced SDFs, including particle size, morphology, and crystallinity. Moreover, ball milling treatment led to a higher exothermic temperature peak of SDF indicating better thermal stability. All produced SDFs significantly elevated the production of short-chain fatty acids during in vitro fermentation (compared to the control fermentation) which indicated their potential benefits of promoting gut health. Overall, we demonstrated that ball-milling-assisted citric acid processing can be an effective green technique to produce SDF from edamame shells. The SDF produced from edamame shells can be regarded as a promising and novel ingredient with great potential to be used in foods.
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    Chemical Compositions of Edamame Genotypes Grown in Different Locations in the US
    Yu, Dajun; Lin, Tiantian; Sutton, Kemper L.; Lord, Nick; Carneiro, Renata C. V.; Jin, Qing; Zhang, Bo; Kuhar, Thomas P.; Rideout, Steven L.; Ross, W. Jeremy; Duncan, Susan E.; Yin, Yun; Wang, Hengjian; Huang, Haibo (2021-02-12)
    The consumption of edamame [Glycine max (L.) Merr.] in the US has rapidly increased due to its nutritional value and potential health benefits. In this study, 10 edamame genotypes were planted in duplicates in three different locations in the US-Whitethorne, Virginia (VA), Little Rock, Arkansas (AR), and Painter, VA. Edamame samples were harvested at the R6 stage of the bean development when beans filled 80-90% of the pod cavity. Afterward, comprehensive chemical composition analysis, including sugars, alanine, protein, oil, neutral detergent fiber (NDF), starch, ash, and moisture contents, were conducted on powdered samples using standard methods and the total sweetness was calculated based on the measured sugars and alanine contents. Significant effects of the location were observed on all chemical constituents of edamame (p < 0.05). The average performance of the genotypes was higher in Whitethorne for the contents of free sucrose (59.29 mg/g), fructose (11.42 mg/g), glucose (5.38 mg/g), raffinose (5.32 mg/g), stachyose (2.34 mg/g), total sweetness (78.63 mg/g), and starch (15.14%) when compared to Little Rock and Painter. The highest soluble alanine (2.67 mg/g), NDF (9.00%), ash (5.60%), and moisture (70.36%) contents were found on edamame planted in Little Rock while edamame planted in Painter had the highest crude protein (43.11%) and oil (20.33%) contents. Significant effects of genotype were observed on most of the chemical constituents (p < 0.05) except NDF and raffinose. Among the 10 genotypes, R13-5029 consistently had high sucrose content and total sweetness across the three locations, meanwhile it had relatively high protein and fiber contents. Overall, the results indicate that to breed better edamame genotypes in the US, both genotype and planting location should be taken into considerations.
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    A chromosome 16 deletion conferring a high sucrose phenotype in soybean
    Ostezan, Alexandra; Prenger, Elizabeth M.; Rosso, Luciana; Zhang, Bo; Stupar, Robert M.; Glenn, Travis; Mian, M. A. Rouf; Li, Zenglu (Springer, 2023-05)
    Key messageSucrose in soybean seeds is desirable for many end-uses. Increased sucrose contents were discovered to associate with a chromosome 16 deletion resulting from fast neutron irradiation.Soybean is one of the most economically important crops in the United States. A primary end-use of soybean is for livestock feed. Therefore, genetic improvement of seed composition is one of the most important goals in soybean breeding programs. Sucrose is desired in animal feed due to its role as an easily digestible energy source. An elite soybean line was irradiated with fast neutrons and the seed from plants were screened for altered seed composition with near-infrared spectroscopy (NIR). One mutant line, G15FN-54, was found to have higher sucrose content (8-9%) than the parental line (5-6%). Comparative genomic hybridization (CGH) revealed three large deletions on chromosomes (Chrs) 10, 13, and 16 in the mutant, which were confirmed through whole genome sequencing (WGS). A bi-parental population derived from the mutant G15FN-54 and the cultivar Benning was developed to conduct a bulked segregant analysis (BSA) with SoySNP50K BeadChips, revealing that the deletion on Chr 16 might be responsible for the altered phenotype. The mapping result using the bi-parental population confirmed that the deletion on Chr 16 conferred elevated sucrose content and a total of 21 genes are located within this Chr 16 deletion. NIR and high-pressure liquid chromatography (HPLC) were used to confirm the stability of the phenotype across generations in the bi-parental population. The mutation will be useful to understand the genetic control of soybean seed sucrose content.
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    Combining Agronomic and Pest Studies to Identify Vegetable Soybean Genotypes Suitable for Commercial Edamame Production in the Mid-Atlantic U.S.
    Lord, Nick; Kuhar, Thomas P.; Rideout, Steven L.; Sutton, Kemper L.; Alford, Adam M.; Li, Xiaoying; Wu, Xingbo; Reiter, Mark S.; Doughty, Hélène; Zhang, Bo (Scientific Research Publishing, 2021)
    Currently, domestic production of vegetable soybean (aka “edamame”) lags well behind consumer demand, with approximately 70% of U.S.-consumed edamame imported each year. A major barrier for growth of the U.S. edamame industry is an overall lack of varieties with adequate consumer acceptability and adaption to the U.S. climate and environment. In this study, we evaluated eleven vegetable soybean genotypes (including one commercial check) for differences in yield, pod size, and resistance to local insect, bacterial, and fungal pressures in order to identify genotypes with the greatest potential for use in commercial edamame production. Although there were variations in average pod length (42.1 - 53.6 mm), width (10.9 - 12.7 mm), and thickness (6.29 - 7.34 mm) among the genotypes, only pod length showed statistical significance. In addition, genotype significantly affected fresh pod yield. The prevalence of specific insect pests varied by location and year and included soybean aphid, potato leafhopper, Mexican bean beetle, as well as a complex of stink bugs and lepidopteran larvae. For each of these insect pests, significant differences were observed. Some plant diseases observed on the edamame genotypes included: downy mildew, bacterial pustule, Fusarium pod rot, Cercospora blight and purple seed stain, and damping off. In 2018, in Whitethorne, VA, soybean downy mildew was quite prevalent and disease symptoms varied considerably. Overall, genotypes V16-0524 and R15-10280 showed particularly favorable yield, and resilience to native pests compared to the commercial check, UA-Kirksey. The genotypes V16-0524 and R15-10280 showed strong potential to increase the availability of varieties that can be used for commercial edamame production in the Mid-Atlantic region.
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    Creation of Early Flowering Germplasm of Soybean by CRISPR/Cas9 Technology
    Han, Jianan; Guo, Bingfu; Guo, Yong; Zhang, Bo; Wang, Xiaobo; Qiu, Li-Juan (2019-11-22)
    Soybean is an important economic crop and a typical short-day crop, sensitive to photoperiod, and has narrow geographical adaptative region, which limit the creation of transgenic materials and reduce the breeding efficiency of new varieties. In addition, the genetic transformation efficiency of soybean is lower than that of many other crops, and the available receptor genotypes are limited. In this study, Agrobacterium-mediated transformation were used to introduce the CRISPR/Cas9 expression vector into soybean cultivar Jack and generated targeted mutants of E1 gene controlling soybean flowering. We obtained two novel types of mutations, 11 bp and 40 bp deletion at E1 coding region, respectively, and frameshift mutations produced premature translation termination codons and truncated E1 proteins, causing obvious early flowering under long day condition. In addition, no off-target effects were observed by predicting and analyzing the potential off-target sites of E1 targets. Significant decreased E1 gene expression of two novel mutants showed that the truncated E1 protein disinhibited GmFT2a/5a and increasing GmFT2a/5a gene expressions resulted obvious early flowering. Homozygous trans-clean mutants without T-DNA elements were also obtained and showed early flowering under long day condition. The photo-insensitive soybean transformation receptor we created laid a foundation for breeding excellent transgenic receptors suitable for high latitudes.
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    Determining Genetic Markers and Seed Compositions Related to High Test Weight in Glycine max
    Shea, Zachary; Singer, William M.; Rosso, Luciana; Song, Qijian; Zhang, Bo (MDPI, 2023-08-19)
    Test weight, one of the primary indicators of soybean seed quality, is measured as the amount of soybean seeds in kilograms that can fit into one hectoliter. The price that growers receive for their soybean is dependent on test weight. Over the past 50 years, growers have observed a decreasing trend in test weight. Therefore, it is imperative to understand better the relationship between soybean test weight and other traits to enable breeders to select parental lines with high test weights in breeding programs to ensure the grower’s profitability. The objectives of the study were to identify genetic markers associated with high test weight in soybean and to determine the correlation between high test weight and five important seed composition traits (protein, oil, sucrose, raffinose, and stachyose content). Maturity group IV and V germplasms from the USDA soybean germplasm collection were grown in Blacksburg and Warsaw in Virginia from 2019 to 2021 and were measured for all of the above traits. Results show that test weight values ranged from 62–77 kg/hL over the three years. Multiple single-nucleotide polymorphisms (SNPs) significantly associated with high test weight were found on chromosome (Chr.) 15 along with a couple on chromosome 14, and 11 candidate genes were found near these SNPs. Test weight was found to be significantly negatively correlated with oil content, inconsistently correlated with protein content in all environments, and negatively correlated but not significantly with all three sugars except for raffinose in Blacksburg 2019. We concluded that the genes that underlie test weight might be on chromosome 15, and the validated associated SNPs might be used to assist breeding selection of test weight. Breeders should pay special attention to test weight while selecting for high oil content in soybean due to their negative correlation.
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    Development of Breeder-Friendly KASP Markers for Low Concentration of Kunitz Trypsin Inhibitor in Soybean Seeds
    Rosso, M. Luciana; Shang, Chao; Song, Qijian; Escamilla, Diana M.; Gillenwater, Jay; Zhang, Bo (MDPI, 2021-03-06)
    Trypsin inhibitors (TI), a common anti-nutritional factor in soybean, prevent animals’ protein digestibility reducing animal growth performance. No commercial soybean cultivars with low or null concentration of TI are available. The availability of a high throughput genotyping assay will be beneficial to incorporate the low TI trait into elite breeding lines. The aim of this study is to develop and validate a breeder friendly Kompetitive Allele Specific PCR (KASP) assay linked to low Kunitz trypsin inhibitor (KTI) in soybean seeds. A total of 200 F3:5 lines derived from PI 547656 (low KTI) X Glenn (normal KTI) were genotyped using the BARCSoySNP6K_v2 Beadchip. F3:4 and F3:5 lines were grown in Blacksburg and Orange, Virginia in three years, respectively, and were measured for KTI content using a quantitative HPLC method. We identified three SNP markers tightly linked to the major QTL associated to low KTI in the mapping population. Based on these SNPs, we developed and validated the KASP assays in a set of 93 diverse germplasm accessions. The marker Gm08_44814503 has 86% selection efficiency for the accessions with low KTI and could be used in marker assisted breeding to facilitate the incorporation of low KTI content in soybean seeds.
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    Ecology of Root Nodule Bacterial Diversity: Implications for Soybean Growth
    Sharaf, Hazem (Virginia Tech, 2021-11-30)
    Diazotrophs supply legumes such as soybean (Glycine max L. Merr) with nitrogen (N) needed for protein synthesis through biological nitrogen fixation (BNF). Through BNF, these bacteria such as Bradyrhizobium that reside in soybean root nodules, convert atmospheric nitrogen (N2) into ammonia (NH3/ NH4), a form that is biologically available for use by the plants, in return for photosynthate carbon from the plant. Abiotic stresses such as drought disrupt BNF and subsequently affects soybean yield. In addition, increasing demand for soybean is leading to supplementing its growth with synthetic N fertilizer. However, fertilizer application is known for its detrimental effects on the environment causing waterways eutrophication contributing to global warming. On the other hand, diazotrophs can supply soybean with up to 90% of N need. As such, improving the understanding and exploiting the relationship between soybean and diazotrophs is key to promoting the sustainable growing of soybean. This dissertation here investigates three main questions. First, how the soybean-diazotrophs respond to changes in water such as rainfall and irrigation. Second, how changes in these bacterial diazotrophs are related to levels of BNF, and N-related soybean molecular markers. Finally, as my colleagues and I found non-diazotrophs in the nodules of some soybean plants, I was curious about the role they are playing inside the nodules in concert with the diazotrophs. The main hypotheses tested in this dissertation are that root nodule bacterial community (bacteriome) would (1) vary by plant type, (2) respond to changes in water, and (3) be related to BNF. To answer the research questions, I devised the dissertation as follows. In Chapter 2, my colleagues and I used nine commercial cultivars of soybean that vary in drought tolerance and agronomic traits. We show that soybean sometimes, but not always, harbor a consortium of non-nitrogen fixing bacteria belonging to Pseudomonadaceae and Enterobacteriaceae families. However, as expected, nodules diazotrophs rather than non-diazotrophs responded most to changes in soil water status. In chapter 3, I used a collection of 24 genotypes of soybean that vary in their ability to fix nitrogen. The results revealed that the bacteriome diazotroph alpha diversity metrics, phylogenetic richness and evenness, was correlated with changes in BNF. Moreover, few N-related molecular markers were associated with some of the bacteria. However, we have also observed a strong effect of the environment on the diazotroph driven process of BNF (i.e. 39%-75%). For chapter 4, we sequenced three of the Pseudomonas spp. strains that were subsequently recovered again from a diversity of soybean nodules in field trials. I found that one of the strains has the ability to adapt to the nodule's unique hypoxic conditions, supporting Bradyrhizobium nodulation and possibly nodule iron. The results include the draft assembly of the proposed Pseudomonas nodulensis sp. nov. as a novel species of nodule adapted bacteria belonging to the P. fluorescens complex. The results of this dissertation contribute to the basic knowledge needed to advance sustainable breeding and management of soybean. Nodule diazotrophs are sensitive to water status e.g. drought, and other experiments have shown that the nodule bacteriome is the driver of BNF. Thus, improving the understanding and exploiting the nodule bacteriome will support developing more resilient cultivars of soybean that are efficient in BNF, and tolerant of stress. Identifying and testing diazotrophs and atypical nodule bacteria will provide a platform for developing new inoculants and biofertilizers.
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    Economic and chemometric studies to supplement food-grade soybean variety development in the Mid-Atlantic region
    Lord, Nilanka (Virginia Tech, 2021-01-07)
    Sustainability of the soybean industry relies on the growth of new industries and the continued improvement of seeds for utilization. Grower adoption and growth of the edamame industry has been slow in part due to insufficient information on its potential profitability and marketability. As such, the first and second objectives of this thesis aimed at 1) determining production costs of hand-harvested fresh edamame enterprise and 2) exploring consumer willingness-to-pay (WTP) for fresh, local, organic, and "on-the-stalk" marketed edamame. Sucrose, raffinose, and stachyose sugars hold tremendous implications for utilization of soybean seeds in livestock, soyfood, and probiotics industries. Current sugar phenotyping methods using high-performance liquid chromatography (HPLC) are costly and inefficient. Therefore, the third objective of this study was to develop calibrations to predict sugar content using near-infrared reflectance spectroscopy (NIRS). Results showed that labor accounted for 72% of production costs for edamame pods, which largely limits its profit potential. Mean WTP for fresh and local edamame exceeded their frozen and non-local counterparts by 94 and 88 cents, respectively. In addition, mean WTP for organic edamame exceeded non-GMO edamame by 33 cents. Pro-environmental attitudes appeared to be a consistent driver of WTP these three attributes. Meanwhile, a 40-cent discount for "on-the-stalk" edamame compared to pods indicates convenience may also be a factor in edamame marketability. Calibration development for sucrose and stachyose was successful, with R2cal, R2cv, RMSEC, and RMSECV of 0.901, 0.869, 0.516, and 0.596, and 0.911, 0.891, 0.361, and 0.405, respectively. Alternative methods should be investigated for quantification of raffinose.
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    Edamame Yield and Quality Response to Nitrogen and Sulfur Fertilizers
    Brooks, Keren; Reiter, Mark S.; Zhang, Bo; Mott, Joshua (MDPI, 2023-07-14)
    As United States farmers adapt soybean (Glycine max) production methods from oilseed to vegetable (edamame), key management practices will need to be considered. The key objective of this study was to determine the optimal nitrogen (N) rate and N application timing for edamame in the mid-Atlantic coastal plain system. The study was conducted for three years in Painter, VA, USA on sandy loam soils. A factorial arrangement of four N rates was applied with two application timing strategies: at-planting, and split application. Leaf tissue samples were collected and analyzed at R1. At harvest, the Normalized Difference Vegetation Index (NDVI) was measured, whole pods were mechanically collected, and yield was recorded. Additionally, pod and bean physical and chemical quality were assessed. Nitrogen fertilization significantly increased pod yield in two out of three years. R1 leaf N and sulfur (S) concentrations correlated to the yield, and R1 leaf and R6 whole-plant N concentrations correlated to the total N uptake. None of the tested parameters indicated that N fertilizer decreased yield or quality. In conclusion, we found that N fertilizer applied at planting may aid edamame yield and profit for sandy loam soils in the mid-Atlantic, USA.
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    Effect of Priming and Seed Size on Germination and Emergence of Six Food-Type Soybean Varieties
    Kering, Maru K.; Zhang, Bo (Hindawi, 2015-12-10)
    Soybean (Glycine max (L.) Merr.), a good source of protein and oil, is used to produce nutritious isoflavone-rich soybean-based foods. The objectives of this study were (i) to determine the germination difference among soybean seeds in various seed sizes and (ii) to evaluate effects of seed pretreatment on germination and seedling emergence. Six varieties of different seed size class were used: (i) small size (MFS-561 and V08-4773), (ii) medium size (Glen and V03-47050), and (iii) large size (MFL-159 and V07-1897). Pregermination treatments include 0, 5, or 10 hours soaking and germinating/planting with or without nitrogen fertilizer. Large seed size varieties showed low germination rate and N addition caused the least reduction in germination in these seeds during the first 24 hours. While N had no effect on seed germination after 72 hours, growth in N treated seed was low. Seedling emergence was comparable across varieties in 2013 and water priming and N application had no effect. However, while varieties did not differ in final emergence for nonprimed seeds in 2014, water priming led to a high reduction in seedling emergence of large seed varieties in this study. Application of N fertilizer had no effect on seedling emergence in field experiments.
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    Effect of Year, Location, Cropping System, Maturity Group, and Variety on Protein and Oil Content of Virginia Soybean 2019-2020
    Bond, Kayla; Holshouser, David L.; Zhang, Bo; Oakes, Joseph (Virginia Tech, 2021-12-13)
    Soybean is a crop valued highly for its protein and oil content. Although soybean varieties have been regularly tested in Virginia for yield and other performance parameters, protein and oil measurements have not been collected prior to 2019. The purpose of this project was to compile data to determine if protein and oil content of Virginia soybean varied between year, location, cropping system, maturity group, or variety. Data was collected across five locations in Virginia over the 2019 and 2020 growing seasons for maturity groups 3, 4, and 5 in full-season and double-crop systems. While all factors examined affected protein and oil content, there was no consistency across time, location, cropping system, or maturity group. All factors interacted with each other; 2-, 3-, and 4-way interactions were present. There were differences in varieties for all experiments, except there were no protein differences for maturity group 3 varieties in either year; and, there were no oil differences in maturity group 3 varieties in 2019. Although cropping system differences occurred in 6 of 8 year-maturity group combinations and in 7 of 8 year-maturity group combinations for oil, in only one instance did cropping system interact with variety, indicating that differences of protein and oil content of varieties were relatively stable over cropping systems. Further data collection and analysis is necessary to determine consistencies within variables that affect protein content or oil content of Virginia soybean.
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    Enhancing Seed Quality and Application of Soybean through High Test Weigh and Low Trypsin Inhibitors
    Shea, Zachary (Virginia Tech, 2023-02-09)
    Soybean is an integral oilseed crop that is used all over the world. Despite this, soybean has been experiencing a decrease in seed quality seen by the decreasing trend in test weight, and is limited in its uses due to the antinutritional factor, trypsin inhibitor (TI). This project first worked to identify single nucleotide polymorphisms (SNPs) associated with high test weight through a genome-wide association study (GWAS) as well as determine the relationship between important seed composition traits and test weight. Additionally, it focused on identifying and knocking out KTI genes specifically expressed in soybean seed tissue through CRISPR/Cas9. Lastly, this project investigated further use of soybean in aquaculture by evaluating the performance of Rainbow trout fed diets with low-TI, 'VT Barrack' soy meal. Nine SNPs on chromosome 15 were found to be significantly associated with high test weight as and eight potential gene candidates were identified. Test weight was found to be significantly, and negatively related to seed oil content and had inconsistent correlations with protein and sugar content. The KTI genes KTI1, Glyma01g095000, and KTI3, Glyma08g341500, were found to be only expressed in seed tissues and multiple KTI knock-out soybean plants with decreased seed TI content and activity were developed. Lastly, we found that our low-TI soymeal could replace 30% of fish meal in aquafeeds with no negative effects on trout growth and health.
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    Establishment and application of an accurate identification method for fragrant soybeans
    Zhang, Yong-fang; Zhang, Chun-yan; Zhang, Bo; Yin, Man; Hong, Hui-long; Yu, Li-li; Gao, Hua-wei; Gu, Yong-zhe; Liu, Zhang-xiong; Li, Fu-heng; Qiu, Li-Juan (2021-05)
    In order to screen the aroma characteristics of soybean, a new method was established which can quickly quantify the content of 2-acetyl-1pyrroline (2-AP), an important compound related to soybean aroma, using gas chromatography-mass spectrometry (GC-MS). Based on peak profile, total peak area and retention time as test indexes, an accurate identification method for fragrant soybeans was established. The optimum parameters of the protocol consisted of column temperature 70 degrees C, sample injector temperature 180 degrees C, optimum extraction alcohol content 1 mL, NaCl content 0.1 g, ultrasonication time 10 min, and extraction time 1 h, which were established by using the orthogonal test of single factors and three factors with four levels (L-9(3)(4)). 2-AP content of leaves had significant correlations with seeds, which were easier to measure. The protocol was simple and easy to carry out, consumed only small amounts of reagents, and provided accurate and reliable results with good reproducibility. A total of 101 soybean genotypes from different geographical sources were analyzed using this protocol. The results showed that the average content of 2-AP was 0.29 mg L-1, ranging from 0.094 to 1.816 mg L-1, and the genetic diversity index was 0.54. Among all genotypes-tested, they were classified into three grades, including seven elite genotypes identified as "grade one fragrant soybeans", which were Zhonglong 608, Heinong 88, Ha13-2958, Hongmiandou, Heinong 82, Huangmaodou, and Jiyu 21. These results provide both an identification technique and several elite aroma genotypes for gene discovery and good quality breeding in soybean.