Now showing items 1-3 of 3

    • ClaMS: A Classifier for Metagenomic Sequences 

      Pati, Amrita; Heath, Lenwood S.; Kyrpides, Nikos C.; Ivanova, Natalia (Springer, 2011)
      ClaMS – “Classifier for Metagenomic Sequences” – is a Java application for binning assembled contigs in metagenomes using user-specified training sets and initial parameters. Since ClaMS trains on sequence composition-based ...
    • CMGSDB: integrating heterogeneous Caenorhabditis elegans data sources using compositional data mining 

      Pati, Amrita; Jin, Ying; Klage, Karsten; Helm, Richard F.; Heath, Lenwood S.; Ramakrishnan, Naren (Oxford Univ Press, 2008-01-01)
      CMGSDB (Database for Computational Modeling of Gene Silencing) is an integration of heterogeneous data sources about Caenorhabditis elegans with capabilities for compositional data mining (CDM) across diverse domains. ...
    • XcisClique: analysis of regulatory bicliques 

      Pati, Amrita; Vasquez-Robinet, Cecilia; Heath, Lenwood S.; Grene, Ruth; Murali, T. M. (2006-04-21)
      Background Modeling of cis-elements or regulatory motifs in promoter (upstream) regions of genes is a challenging computational problem. In this work, set of regulatory motifs simultaneously present in the promoters of a ...