Now showing items 1-3 of 3

    • Evolutionary superscaffolding and chromosome anchoring to improve Anopheles genome assemblies 

      Waterhouse, Robert M.; Aganezov, Sergey; Anselmetti, Yoann; Lee, Jiyoung; Ruzzante, Livio; Reijnders, Maarten J. M. F.; Feron, Romain; Bérard, Sèverine; George, Phillip; Hahn, Matthew W.; Howell, Paul I.; Kamali, Maryam; Koren, Sergey; Lawson, Daniel; Maslen, Gareth; Peery, Ashley; Phillippy, Adam M.; Sharakhova, Maria V.; Tannier, Eric; Unger, Maria F.; Zhang, Simo V.; Alekseyev, Max A.; Besansky, Nora J.; Chauve, Cedric; Emrich, Scott J.; Sharakhov, Igor V. (2020-01-02)
      Abstract Background New sequencing technologies have lowered financial barriers to whole genome sequencing, but resulting assemblies are often fragmented and far from ‘finished’. ...
    • Improving the population genetics toolbox for the study of the African malaria vector Anopheles nili: microsatellite mapping to chromosomes 

      Peery, Ashley; Sharakhova, Maria V.; Antonio-Nkondjio, Christophe; Ndo, Cyrille; Weill, Mylene; Simard, Frédéric; Sharakhov, Igor V. (Biomed Central Ltd, 2011-10-19)
      Background Anopheles nili is a major vector of malaria in the humid savannas and forested areas of sub-Saharan Africa. Understanding the population genetic structure and evolutionary dynamics of this species is important ...
    • Integrating transcriptomic and proteomic data for accurate assembly and annotation of genomes 

      Prasad, T. S. Keshava; Mohanty, Ajeet Kumar; Kumar, Manish; Sreenivasamurthy, Sreelakshmi K.; Dey, Gourav; Nirujogi, Raja Sekhar; Pinto, Sneha M.; Madugundu, Anil K.; Pati, Arun H.; Advani, Jayshree; Manda, Srikanth S.; Gupta, Manoj Kumar; Dwivedi, Sutopa B.; Kelkar, Dhanashree S.; Hall, Brantley; Jiang, Xiaofang; Peery, Ashley; Rajagopalan, Pavithra; Yelamanchi, Soujanya D.; Solanki, Hitendra S.; Raja, Remya; Sathe, Gajanan J.; Chavan, Sandip; Verma, Renu; Patel, Krishna M.; Jain, Ankit P.; Syed, Nazia; Datta, Keshava K.; Khan, Aafaque Ahmed; Dammalli, Manjunath; Jayaram, Savita; Radhakrishnan, Aneesha; Mitchell, Christopher J.; Na, Chan-Hyun; Kumar, Nirbhay; Sinnis, Photini; Sharakhov, Igor V.; Wang, Charles; Gowda, Harsha; Tu, Zhijian; Kumar, Ashwani; Pandey, Akhilesh (2017-01)
      Complementing genome sequence with deep transcriptome and proteome data could enable more accurate assembly and annotation of newly sequenced genomes. Here, we provide a proof-of-concept of an integrated approach for ...