Now showing items 1-3 of 3

    • Minimum Information About a Simulation Experiment (MIASE) 

      Waltemath, Dagmar; Adams, Richard; Beard, Daniel A.; Bergmann, Frank T.; Bhalla, Upinder S.; Britten, Randall; Chelliah, Vijayalakshmi; Cooling, Michael T.; Cooper, Jonathan; Crampin, Edmund J.; Garny, Alan; Hoops, Stefan; Hucka, Michael; Hunger, Peter; Klipp, Edda; Laibe, Camille; Miller, Andrew K.; Moraru, Ion; Nickerson, David; Nielsen, Poul; Nikolski, Macha; Sahle, Sven; Sauro, Herbert M.; Schmidt, Henning; Snoep, Jacky L.; Tolle, Dominic; Wolkenhauer, Olaf; Le Novère, Nicolas (Public Library of Science, 2011-04-28)
      Reproducibility of experiments is a basic requirement for science. Minimum Information (MI) guidelines have proved a helpful means of enabling reuse of existing work in modern biology. The Minimum Information Required in ...
    • Systematic Reverse Engineering of Network Topologies: A Case Study of Resettable Bistable Cellular Responses 

      Mondal, Debasish; Dougherty, Edward T.; Mukhopadhyay, Abhishek; Carbo, Adria; Yao, Guang; Xing, Jianhua (Public Library of Science, 2014-08-29)
      A focused theme in systems biology is to uncover design principles of biological networks, that is, how specific network structures yield specific systems properties. For this purpose, we have previously developed a reverse ...
    • Using Interpolation to Estimate System Uncertainty in Gene Expression Experiments 

      Falin, Lee J.; Tyler, Brett M. (Public Library of Science, 2011-07-22)
      The widespread use of high-throughput experimental assays designed to measure the entire complement of a cell's genes or gene products has led to vast stores of data that are extremely plentiful in terms of the number of ...