Browsing Journals by Author "Yan, Haidong"
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Combinations of Small RNA, RNA, and Degradome Sequencing Uncovers the Expression Pattern of microRNA–mRNA Pairs Adapting to Drought Stress in Leaf and Root of Dactylis glomerata L.
Ji, Yang; Chen, Peilin; Chen, Jing; Pennerman, Kayla K.; Liang, Xiaoyu; Yan, Haidong; Zhou, Sifan; Feng, Guangyan; Wang, Chengran; Yin, Guohua; Zhang, Xinquan; Hu, Yuanbin; Huang, Linkai (MDPI, 2018-10-11)Drought stress is a global problem, and the lack of water is a key factor that leads to agricultural shortages. MicroRNAs play a crucial role in the plant drought stress response; however, the microRNAs and their targets ... -
Comparative transcriptome study of switchgrass (Panicum virgatum L.) homologous autopolyploid and its parental amphidiploid responding to consistent drought stress
Chen, Peilin; Chen, Jing; Sun, Min; Yan, Haidong; Feng, Guangyan; Wu, Bingchao; Zhang, Xinquan; Wang, Xiaoshan; Huang, Linkai (2020-10-15)Background Newly formed polyploids may experience short-term adaptative changes in their genome that may enhance the resistance of plants to stress. Considering the increasingly serious effects of drought on biofuel plants, ... -
Integration of small RNAs and transcriptome sequencing uncovers a complex regulatory network during vernalization and heading stages of orchardgrass (Dactylis glomerata L.)
Feng, Guangyan; Xu, Lei; Wang, Jianping; Nie, Gang; Bushman, Bradley S.; Xie, Wengang; Yan, Haidong; Yang, Zhongfu; Guan, Hao; Huang, Linkai; Zhang, Xinquan (2018-10-03)Background Flowering is a critical reproductive process in higher plants. Timing of optimal flowering depends upon the coordination among seasonal environmental cues. For cool season grasses, such as Dactylis glomerata, ... -
Reference Gene Selection for Quantitative Real-Time Reverse-Transcriptase PCR in Annual Ryegrass (Lolium multiflorum) Subjected to Various Abiotic Stresses
Liu, Qiuxu; Qi, Xiao; Yan, Haidong; Huang, Linkai; Nie, Gang; Zhang, Xinquan (MDPI, 2018-01-16)To select the most stable reference genes in annual ryegrass (Lolium multiflorum), we studied annual ryegrass leaf tissues exposed to various abiotic stresses by qRT-PCR and selected 11 candidate reference genes, ... -
siRNAs regulate DNA methylation and interfere with gene and lncRNA expression in the heterozygous polyploid switchgrass
Yan, Haidong; Bombarely, Aureliano; Xu, Bin; Frazier, Taylor P.; Wang, Chengran; Chen, Peilin; Chen, Jing; Hasing, Tomas; Cui, Chenming; Zhang, Xinquan; Zhao, Bingyu; Huang, Linkai (2018-07-24)Background Understanding the DNA methylome and its relationship with non-coding RNAs, including microRNAs (miRNAs) and long non-coding RNAs (lncRNAs), is essential for elucidating the molecular mechanisms underlying key ... -
Transcriptome analysis of heat stress and drought stress in pearl millet based on Pacbio full-length transcriptome sequencing
Sun, Min; Huang, Dejun; Zhang, Ailing; Khan, Imran; Yan, Haidong; Wang, Xiaoshan; Zhang, Xinquan; Zhang, Jian; Huang, Linkai (2020-07-08)Background Heat and drought are serious threats for crop growth and development. As the sixth largest cereal crop in the world, pearl millet can not only be used for food and forage but also as a source of bioenergy. Pearl ...