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dc.contributor.authorvan Hoek, Monique L.
dc.contributor.authorPrickett, M. D.
dc.contributor.authorSettlage, Robert E.
dc.contributor.authorKang, Lin
dc.contributor.authorMichalak, Pawel
dc.contributor.authorVliet, Kent A.
dc.contributor.authorBishop, Barney M.
dc.date.accessioned2019-09-03T12:38:15Z
dc.date.available2019-09-03T12:38:15Z
dc.date.issued2019-08-30
dc.identifier.citationBMC Genomics. 2019 Aug 30;20(1):684
dc.identifier.urihttp://hdl.handle.net/10919/93331
dc.description.abstractAbstract Background We report the sequencing, assembly and analysis of the genome of the Komodo dragon (Varanus komodoensis), the largest extant lizard, with a focus on antimicrobial host-defense peptides. The Komodo dragon diet includes carrion, and a complex milieu of bacteria, including potentially pathogenic strains, has been detected in the saliva of wild dragons. They appear to be unaffected, suggesting that dragons have robust defenses against infection. While little information is available regarding the molecular biology of reptile immunity, it is believed that innate immunity, which employs antimicrobial host-defense peptides including defensins and cathelicidins, plays a more prominent role in reptile immunity than it does in mammals. . Results High molecular weight genomic DNA was extracted from Komodo dragon blood cells. Subsequent sequencing and assembly of the genome from the collected DNA yielded a genome size of 1.6 Gb with 45x coverage, and the identification of 17,213 predicted genes. Through further analyses of the genome, we identified genes and gene-clusters corresponding to antimicrobial host-defense peptide genes. Multiple β-defensin-related gene clusters were identified, as well as a cluster of potential Komodo dragon ovodefensin genes located in close proximity to a cluster of Komodo dragon β-defensin genes. In addition to these defensins, multiple cathelicidin-like genes were also identified in the genome. Overall, 66 β-defensin genes, six ovodefensin genes and three cathelicidin genes were identified in the Komodo dragon genome. Conclusions Genes with important roles in host-defense and innate immunity were identified in this newly sequenced Komodo dragon genome, suggesting that these organisms have a robust innate immune system. Specifically, multiple Komodo antimicrobial peptide genes were identified. Importantly, many of the antimicrobial peptide genes were found in gene clusters. We found that these innate immunity genes are conserved among reptiles, and the organization is similar to that seen in other avian and reptilian species. Having the genome of this important squamate will allow researchers to learn more about reptilian gene families and will be a valuable resource for researchers studying the evolution and biology of the endangered Komodo dragon.
dc.format.mimetypeapplication/pdfen_US
dc.language.isoenen_US
dc.rightsCreative Commons Attribution 4.0 International*
dc.rights.urihttp://creativecommons.org/licenses/by/4.0/*
dc.titleThe Komodo dragon (Varanus komodoensis) genome and identification of innate immunity genes and clustersen_US
dc.typeArticle - Refereeden_US
dc.date.updated2019-09-01T05:44:55Z
dc.rights.holderThe Author(s).
dc.title.serialBMC Genomicsen_US
dc.identifier.doihttps://doi.org/10.1186/s12864-019-6029-y
dc.type.dcmitypeTexten_US


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Creative Commons Attribution 4.0 International
License: Creative Commons Attribution 4.0 International