Pati, AmritaHeath, Lenwood S.Kyrpides, Nikos C.Ivanova, Natalia2020-07-162020-07-162011http://hdl.handle.net/10919/99365ClaMS – “Classifier for Metagenomic Sequences” – is a Java application for binning assembled contigs in metagenomes using user-specified training sets and initial parameters. Since ClaMS trains on sequence composition-based genomic signatures, it is much faster than binning tools that rely on alignments to homologs; ClaMS can bin ~20,000 sequences in 3 minutes on a laptop with a 2.4 GH× Intel Core 2 Duo processor and 2 GB RAM. ClaMS is meant to be a desktop application for biologists and can be run on any machine under any Operating System on which the Java Runtime Environment can be installed.en-USCreative Commons Attribution-ShareAlike 4.0 InternationalArticle - Refereedhttps://doi.org/10.4056/sigs.20752985