Browsing by Author "Boettiger, Carl"
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- A community convention for ecological forecasting: output files and metadata v1.0Dietze, Michael C.; Thomas, R. Quinn; Peters, Jody; Boettiger, Carl; Koren, Gerbrand; Shiklomanov, Alexey N.; Ashander, Jaime (Wiley, 2023-11-23)This paper summarizes the open community conventions developed by the Ecological Forecasting Initiative (EFI) for the common formatting and archiving of ecological forecasts and the metadata associated with these forecasts. Such open standards are intended to promote interoperability and facilitate forecast communication, distribution, validation, and synthesis. For output files, we first describe the convention conceptually in terms of global attributes, forecast dimensions, forecasted variables, and ancillary indicator variables. We then illustrate the application of this convention to the two file formats that are currently preferred by the EFI, netCDF (network common data form), and comma-separated values (CSV), but note that the convention is extensible to future formats. For metadata, EFI's convention identifies a subset of conventional metadata variables that are required (e.g., temporal resolution and output variables) but focuses on developing a framework for storing information about forecast uncertainty propagation, data assimilation, and model complexity, which aims to facilitate cross-forecast synthesis. The initial application of this convention expands upon the Ecological Metadata Language (EML), a commonly used metadata standard in ecology. To facilitate community adoption, we also provide a Github repository containing a metadata validator tool and several vignettes in R and Python on how to both write and read in the EFI standard. Lastly, we provide guidance on forecast archiving, making an important distinction between short-term dissemination and long-term forecast archiving, while also touching on the archiving of code and workflows. Overall, the EFI convention is a living document that can continue to evolve over time through an open community process.
- Near-term forecasts of NEON lakes reveal gradients of environmental predictability across the USThomas, R. Quinn; McClure, Ryan P.; Moore, Tadhg N.; Woelmer, Whitney M.; Boettiger, Carl; Figueiredo, Renato J.; Hensley, Robert T.; Carey, Cayelan C. (Wiley, 2023-04)The US National Ecological Observatory Network's (NEON's) standardized monitoring program provides an unprecedented opportunity for comparing the predictability of ecosystems. To harness the power of NEON data for examining environmental predictability, we scaled a near-term, iterative, water temperature forecasting system to all six NEON lakes in the conterminous US. We generated 1-day-ahead to 35-days-ahead forecasts using a process-based hydrodynamic model that was updated with observations as they became available. Among lakes, forecasts were more accurate than a null model up to 35-days-ahead, with an aggregated 1-day-ahead root-mean square error (RMSE) of 0.61 degrees C and a 35-days-ahead RMSE of 2.17 degrees C. Water temperature forecast accuracy was positively associated with lake depth and water clarity, and negatively associated with fetch and catchment size. The results of our analysis suggest that lake characteristics interact with weather to control the predictability of thermal structure. Our work provides some of the first probabilistic forecasts of NEON sites and a framework for examining continental-scale predictability.
- The NEON Ecological Forecasting ChallengeThomas, R. Quinn; Boettiger, Carl; Carey, Cayelan C.; Dietze, Michael C.; Johnson, Leah R.; Kenney, Melissa A.; McLachlan, Jason S.; Peters, Jody A.; Sokol, Eric R.; Weltzin, Jake F.; Willson, Alyssa; Woelmer, Whitney M. (Wiley, 2023-04)