Browsing by Author "Han, Chao"

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    Bayesian Visual Analytics: Interactive Visualization for High Dimensional Data
    Han, Chao (Virginia Tech, 2012-12-07)
    In light of advancements made in data collection techniques over the past two decades, data mining has become common practice to summarize large, high dimensional datasets, in hopes of discovering noteworthy data structures. However, one concern is that most data mining approaches rely upon strict criteria that may mask information in data that analysts may find useful. We propose a new approach called Bayesian Visual Analytics (BaVA) which merges Bayesian Statistics with Visual Analytics to address this concern. The BaVA framework enables experts to interact with the data and the feature discovery tools by modeling the "sense-making" process using Bayesian Sequential Updating. In this paper, we use BaVA idea to enhance high dimensional visualization techniques such as Probabilistic PCA (PPCA). However, for real-world datasets, important structures can be arbitrarily complex and a single data projection such as PPCA technique may fail to provide useful insights. One way for visualizing such a dataset is to characterize it by a mixture of local models. For example, Tipping and Bishop [Tipping and Bishop, 1999] developed an algorithm called Mixture Probabilistic PCA (MPPCA) that extends PCA to visualize data via a mixture of projectors. Based on MPPCA, we developped a new visualization algorithm called Covariance-Guided MPPCA which group similar covariance structured clusters together to provide more meaningful and cleaner visualizations. Another way to visualize a very complex dataset is using nonlinear projection methods such as  the Generative Topographic Mapping algorithm(GTM). We developped an interactive version of GTM to discover interesting local data structures. We demonstrate the performance of our approaches using both synthetic and real dataset and compare our algorithms with existing ones.
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    Expert-Guided Generative Topographical Modeling with Visual to Parametric Interaction
    Han, Chao; House, Leanna L.; Leman, Scotland C. (PLOS, 2016-02-23)
    Introduced by Bishop et al. in 1996, Generative Topographic Mapping (GTM) is a powerful nonlinear latent variable modeling approach for visualizing high-dimensional data. It has shown useful when typical linear methods fail. However, GTM still suffers from drawbacks. Its complex parameterization of data make GTM hard to fit and sensitive to slight changes in the model. For this reason, we extend GTM to a visual analytics framework so that users may guide the parameterization and assess the data from multiple GTM perspectives. Specifically, we develop the theory and methods for Visual to Parametric Interaction (V2PI) with data using GTM visualizations. The result is a dynamic version of GTM that fosters data exploration. We refer to the new version as V2PI-GTM. In this paper, we develop V2PI-GTM in stages and demonstrate its benefits within the context of a text mining case study.