Browsing by Author "Kelly, Marcella J."
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- Anthropogenic effects on site use and temporal patterns of terrestrial mammals in Harenna Forest, EthiopiaGichuru, Phillys Njambi (Virginia Tech, 2022-03-22)There has been little research comprehensively documenting wildlife species in Harenna Forest within the Bale Mountains National Park of Ethiopia. This area is one of the few remaining afro-alpine biodiversity hotspots and is home to numerous endemic plants and animals and offers socio-economic benefits to the neighboring communities. Human population pressure, weak land protection policies, and uncertain land tenure rights have led to increases in farmland for subsistence and coffee farming, livestock grazing, and reduction of afro-alpine, shrubland and grassland habitats. Given these challenges, I used 48 camera trap stations to produce an inventory of wildlife species and to determine factors influencing occupancy (i.e., habitat use), detection, and temporal activity and overlap. I recorded 26 terrestrial and arboreal mammalian species and I had sufficient data to model occupancy for 13 species and temporal activity for 14 species. Occupancy and detection were generally higher for herbivores and omnivores (occupancy: 0.28-0.97; detection: 0.1-0.54) than carnivores (occupancy: 0.31-0.80; detection: 0.04-0.18). I found more evidence of positive anthropogenic impacts on herbivore and omnivore occupancy than negative, while detection was influenced by habitat or landscape features, rather than by humans. Carnivore occupancy was largely unaffected by anthropogenic or habitat variables, but detection was strongly, and mostly positively, influenced by anthropogenic impacts. Temporal activity analyses revealed that, for herbivores and omnivores, only tree hyraxes (Dendrohyrax arboreus) and crested porcupines (Hystrix cristata) were nocturnal, Menelik bushbucks (Tragelaphus scriptus meneliki) were crepuscular, and the remaining species ranged from diurnal to cathemeral. Neither similar body size nor similar diet affected overlap between species pairs. However, overlap with human temporal activity was low for Menelik bushbucks (Δ=0.45) and common duikers (Sylvicapra grimmia) appeared to become less active at stations with high human use. For carnivores, leopards (Panthera pardus) and honey badgers (Mellivora capensis) were crepuscular, and the remaining species were nocturnal. I found evidence that carnivores overlapped less when they were more similar in body size to other carnivores (average Δ=0.67-0.71) compared to species more dissimilar in body size (average Δ=0.75), although there was variation across species. In general, carnivores overlapped much less with humans (average Δ=0.20) than did herbivores (average Δ=0.52) and omnivores (average Δ=0.43). Spotted hyenas (Crocuta crocuta), in particular, appeared to alter activity to reduce overlap with humans. This study provides baseline information on presence, distribution, and activity of large- and medium-sized terrestrial and arboreal mammals in an understudied biodiversity hotspot. My findings are concerning for biodiversity conservation as rare and endangered species (e.g., mountain nyalas (Tragelaphus buxtoni), Ethiopian wolves (Canis simensis)) were rarely or never photographed, and larger carnivores (e.g., lions (Panthera leo), leopards, jackals), generally had low capture rates. The species with higher capture rates, occupancy, and activity tended to be those that can tolerate or take advantage of human activity and disturbance. Species sensitive to human disturbance eventually may be lost unless measures can be put in place to reduce human impacts. This baseline knowledge is important for future studies examining trends in mammalian wildlife populations, such as site extinction and colonization, or changes in overlap with humans, in a landscape that is continuing to experience human-caused, landscape change.
- Assessing global patterns in mammalian carnivore occupancy and richness by integrating local camera trap surveysRich, Lindsey N.; Davis, Courtney L.; Farris, Zachary J.; Miller, David A. W.; Tucker, Jody M.; Hamel, Sandra; Farhadinia, Mohammad S.; Steenweg, Robin; Di Bitetti, Mario S.; Thapa, Kanchan; Kane, Mamadou D.; Sunarto, Sunarto; Robinson, Nathaniel P.; Paviolo, Agustin; Cruz, Paula; Martins, Quinton; Gholikhani, Navid; Taktehrani, Atieh; Whittington, Jesse; Widodo, Febri A.; Yoccoz, Nigel G.; Wultsch, Claudia; Harmsen, Bart J.; Kelly, Marcella J. (2017-08)Aim: Biodiversity loss is a major driver of ecosystem change, yet the ecological data required to detect and mitigate losses are often lacking. Recently, camera trap surveys have been suggested as a method for sampling local wildlife communities, because these observations can be collated into a global monitoring network. To demonstrate the potential of camera traps for global monitoring, we assembled data from multiple local camera trap surveys to evaluate the interchange between fine- and broad-scale processes impacting mammalian carnivore communities. Location: Argentina, Belize, Botswana, Canada, Indonesia, Iran, Madagascar, Nepal, Norway, Senegal, South Africa, and the U.S.A. Methods: We gathered camera trap data, totalling >100,000 trap nights, from across five continents. To analyse local and species-specific responses to anthropogenic and environmental variables, we fitted multispecies occurrence models to each study area. To analyse global-level responses, we then fitted a multispecies, multi-area occurrence model. Results: We recorded 4,805 detections of 96 mammalian carnivore species photographed across 1,714 camera stations located in 12 countries. At the global level, our models revealed that carnivore richness and occupancy within study areas was positively associated with prey availability. Occupancy within study areas also tended to increase with greater protection and greater distances to roads. The strength of these relationships, however, differed among countries. Main conclusions: We developed a research framework for leveraging global camera trap data to evaluate patterns of mammalian carnivore occurrence and richness across multiple spatial scales. Our research highlights the importance of intact prey populations and protected areas in conserving carnivore communities. Our research also highlights the potential of camera traps for monitoring wildlife communities and provides a case study for how this can be achieved on a global scale. We encourage greater integration and standardization among camera trap studies worldwide, which would help inform effective conservation planning for wildlife populations both locally and globally.
- Assessing the Influence of Prescribed Fire on Faunal Communities in a Pyric LandscapeJorge, Marcelo Haidar (Virginia Tech, 2020-01-31)Understanding the link between environmental factors such as disturbance events, land cover, and soil productivity to spatial variation in animal distributions and vital rates is fundamental to population ecology and wildlife management. The Longleaf pine (Pinus palustris; hereafter, LLP) ecosystem is an archetypal fire-mediated ecosystem, which has seen drastic reductions in land area due to fire suppression. Current restoration utilizes prescribed fire and hardwood removal, but more research is needed to understand the influence of these restoration efforts on the wildlife that exist in that ecosystem. As such, we conducted field surveys on Camp Blanding Joint Training Center and Wildlife Management Area to understand how fire influences relative abundances of mammalian predators, occupancy and species richness of avian species, guilds and communities, and vital rates of white-tailed deer (Odocoileus viginianus) fawns. Our results indicated that mammalian predator space use, and avian species richness were influenced by fire and land cover. Mammalian predator space use was altered by fire conditions and land cover. This mechanism may support predator management strategies that utilizes commonly management techniques for the restoration and conservation of the LLP ecosystem to indirectly alter predator distributions, which has the potential to positively affect the management of important species within this ecosystem. Some mammalian mesocarnivores historically common throughout the southeastern United States were rarely detected, suggesting more research is needed to identify the cause of the potential decline in mesocarnivores in the Southeastern United States. Avian species richness at the community level was positively influenced by the heterogeneity of post fire conditions, or pyrodiversity. Avian species richness of the cavity nesting guild was negatively influenced by increasing time-since-fire. Our results suggest that managers can promote avian community diversity by reducing the size of burn units to create areas with multiple adjacent burn units, with unique fire histories and a mosaic of post-fire conditions. Lastly, fawn recruitment was greater on the higher productivity site than the low productivity site on CB. However, within sites soil productivity did not have a demonstrable effect. In fact, we observed differences between sites, but did not observe any effects of covariates on spatial variation in density or survival of fawns within sites. Although we did not explicitly test the factors influencing our parameters between sites, we hypothesize that the variation in coyote activity rates as well as soil productivity and its subsequent effects (i.e. forage availability, concealment cover, and land cover type) likely drove the differences we saw between sites. These results are relevant to local managers and provide support for unit-specific, deer management on CB. In conclusion, understanding the influence of fire in a frequently burned landscape allows us to better inform management of predators and avian communities using prescribed burns, and the differences in deer populations between areas allowed us to better in inform managers on harvest quotas so that the magnitude of the effect of harvest can better match the population vital rates of each area.
- Assessment of genetic diversity, population structure, and gene flow of tigers (Panthera tigris tigris) across Nepal's Terai Arc LandscapeThapa, Kanchan; Manandhar, Sulochana; Bista, Manisha; Shakya, Jivan; Sah, Govind; Dhakal, Maheshwar; Sharma, Netra; Llewellyn, Bronwyn; Wultsch, Claudia; Waits, Lisette P.; Kelly, Marcella J.; Hero, Jean-Marc; Hughes, Jane; Karmacharya, Dibesh (PLOS, 2018-03-21)With fewer than 200 tigers (Panthera tigris tigris) left in Nepal, that are generally confined to five protected areas across the Terai Arc Landscape, genetic studies are needed to provide crucial information on diversity and connectivity for devising an effective country-wide tiger conservation strategy. As part of the Nepal Tiger Genome Project, we studied landscape change, genetic variation, population structure, and gene flow of tigers across the Terai Arc Landscape by conducting Nepal's first comprehensive and systematic scat-based, non-invasive genetic survey. Of the 770 scat samples collected opportunistically from five protected areas and six presumed corridors, 412 were tiger (57%). Out of ten microsatellite loci, we retain eight markers that were used in identifying 78 individual tigers. We used this data set to examine population structure, genetic variation, contemporary gene flow, and potential population bottlenecks of tigers in Nepal. We detected three genetic clusters consistent with three demographic sub-populations and found moderate levels of genetic variation (H-e = 0.61, A(R) = 3.51) and genetic differentiation (F-ST = 0.14) across the landscape. We detected 3-7 migrants, confirming the potential for dispersal-mediated gene flow across the landscape. We found evidence of a bottleneck signature likely caused by large-scale land-use change documented in the last two centuries in the Terai forest. Securing tiger habitat including functional forest corridors is essential to enhance gene flow across the landscape and ensure long-term tiger survival. This requires cooperation among multiple stakeholders and careful conservation planning to prevent detrimental effects of anthropogenic activities on tigers.
- Assessment of Physiological Challenges in Overwintering Black Bears (Ursus americanus): Active Gestation, Neonatal Growth, and Skeletal Muscle ConservationMesa Cruz, Jose Bernardo (Virginia Tech, 2018-06-29)The American black bear (ABB) (Ursus americanus) exhibits physiological strategies highly synchronized with the environment. Such strategies enable bears to exploit food resources when available and survive the winter months by hibernating without ingesting food or water. However, there are multiple aspects of ABB hibernation physiology that remain unknown. For instance, there is conflicting evidence on the occurrence of ABB pseudopregnancy (a physiological state in which a non-pregnant bear exhibits progesterone levels similar to gravid bears in the absence of an actual pregnancy). Also, there is little known about postnatal development of cubs or the influence of maternal traits on embryonic implantation and cub growth. Finally, the role of satellite cells (SCs – stem cells able to regenerate muscle fibers) play in maintaining muscle functionality during hibernating remains understudied. Therefore, I aimed to assess these four aforementioned aspects using wild ABBs held temporarily captive at Virginia Tech's Black Bear Research Center (VT-BBRC). The major findings of this dissertation are: 1) I suggest that wild ABBs do not experience pseudopregnancy as a reproductive strategy; 2) interactions between litter size and cub age best described postnatal cub weight dynamics and organ development. Twin cubs were heavier than single and triplet cubs, yet cubs from all litter sizes reached similar weights after mothers began consuming food post hibernation. Single cubs experienced delayed timing in ear, eye, and teeth development compared to other litter sizes; 3) maternal traits such as higher body weight and higher ability to gain weight in the fall are closely associated with earlier timing of embryonic implantation than in leaner females, which gained less weight per day in the fall; and 4) SC ability to generate muscle fibers is increased during ABB hibernation. I propose that maintaining the SCs are an important potential pathway for limiting muscle atrophy during bear hibernation. Understanding pre and postnatal development of ABBs is important for exploring factors related to climate, maternal characteristics, which possibly affect birthing phenology, and fitness of bears experiencing rapid anthropogenic environmental change. Functional aspects of bear muscle conservation are interesting for potentially for elucidating avenues to improve treatments for human metabolic disorders such as muscular dystrophy, sarcopenia, and disuse atrophy.
- An assessment of Quality Deer Management on a private hunt club in the Virginia PiedmontBatts, Gregory K. (Virginia Tech, 2008-02-15)I examined the efficacy of Quality Deer Management (QDM) on Amelia Springs hunt club in Amelia County, Virginia, during 2003-2006. I examined home range dynamics of male white-tailed deer (Odocoileus virginianus), deer/hunter interactions, and aspects of population dynamics. I also developed a new rocket net method to capture deer using a remote video system that was more efficient than traditional methods. I monitored 20 deer; 50% died due to hunting and 15% to natural mortality. The emigration rate for juvenile males was 46%, dispersal distance averaged 6.4 km. I used Home Range Extension (HRE) in ArcView to generate annual home ranges (adaptive-kernel) for 16 male deer; I also generated annual and seasonal home ranges using MCP. Annual and seasonal home ranges (MCP) of adult males were larger than those of juveniles. Adult male annual home ranges averaged 2.5 km2 and juveniles 0.9 km2. Seasonal home ranges of adult males were 1.6 km2 and 1.3 km2 during non-hunting and hunting seasons respectively. Juvenile non-hunting and hunting season home ranges were 0.6 km2 and 0.8 km2 respectively. I detected no differences in day/night movements of male deer during the hunting season; however, deer appeared to avoid areas that were hunted based on hunter GPS locations and deer locations during the hunting season. Frequency of deer movement increased during October-November. Population estimates based on remote camera mark-recapture averaged 60 antlered males for the 3-year survey period. Using population reconstruction, the minimum buck:doe ratio was 1:1.8. Estimated density of antlered males was 4.1/km2, in Amelia County, and 5.0/km2 for Amelia Springs. Deer harvested on Amelia Springs, compared to deer harvested on other hunt clubs in Amelia County, were larger. Antler diameters averaged 32.6mm on Amelia Springs versus 26.9mm for other Amelia county hunt clubs, average age at harvest for 2+ males was higher on Amelia Springs (2.4) than other Amelia county hunt clubs (2.2), and dressed body weights averaged 11.2kg heavier (46.2 kg versus 35 kg) on Amelia Springs. QDM on Amelia Springs appears to be successful based on the results. While bigger bucks existed on Amelia Springs, hunters failed to encounter them. Hunters likely would increase buck sightings during the hunting season by becoming more mobile. Expectations of the size of animal (antlers) Amelia Springs can produce should be adjusted to reflect what is possible based on the habitat. The harvest program in place should be continued at the current level for continued success using QDM.
- Avian population and community dynamics in response to vegetation restoration on reclaimed mine lands in southwest VirginiaLatimer, Chris E. (Virginia Tech, 2012-05-03)Coal surface-mining is often implicated for its negative impacts on native flora and fauna. However, some studies suggest that, in reclaiming land after mining, there may be potential to create early successional habitat needed by many avian species currently in decline throughout eastern North America. I evaluated nest-site selection and nest success for on reclaimed mine lands in southwest Virginia during the summers of 2010 and 2011. For this nest-site analysis, I focused on 2 bird species common to reclaimed mine lands in southwest Virginia: field sparrows (Spizella pusillia) and indigo buntings (Passerina cyanea). In addition, I assessed bird community attributes in relation to various surface-mine reclamation regimens over a 5-year period from 2007-2011. For both species, I found estimates of daily nest success to be higher than other estimates reported in the literature; however, empirical estimates of adult and juvenile survival are needed to provide better estimates of population status. For field sparrows, models of avian nest success support the hypothesis that a tradeoff exists between nest concealment and a view of the surroundings for field sparrows. For indigo buntings, year explained the most variation in nest success, with much lower estimates of daily nest survival in 2010, possibly as a result of increased precipitation. I also assessed avian community dynamics in relation to vegetation changes on reclaimed mine sites and observed a total of 96 species throughout the 4 years of sampling. Local species persistence and species turnover were comparable to another continental scale study conducted using breeding bird survey (BBS) data. Observed changes in community vital rates were likely a result of changes in certain habitat attributes over the 5-year period. Lastly, seven species were unique to certain cover types, suggesting the need to consider landscape level processes when developing restoration guidelines for reclaimed coal surface-mines.
- Bat Habitat Ecology Using Remote Acoustical Detectors at the Army National Guard Maneuver Training Center - Fort Pickett, Blackstone, VirginiaSt Germain, Michael J. (Virginia Tech, 2012-04-25)Bats occupy diverse and unique niches and are regarded as important components in maintaining ecosystem health. They are major consumers of nocturnal insects, serve as pollinators, seed disperser, and provide important economic benefits as consumers of agricultural and forest pest insects. Bats have been proposed as good indicators of the integrity of natural communities because they integrate a number of resource attributes and may show population declines quickly if a resource attribute is missing. Establishing community- and population-level data, and understanding species interactions is especially important in changing landscapes and for species whose populations levels are threatened by outside factors of anthropomorphic disturbance from hibernacular visitation to energy production and fungal pathogens. For these reasons I have set out to establish habitat use patterns, detection probabilities, spatial and temporal occupancy, and investigate species interactions. This thesis is broken down into three distinct chapters each intended to be a stand-alone document. The first establishes the basic ecology from natural history accounts, provides an overview of the various sampling strategies, and gives a comprehensive description of the study area. The seconds sets out to identify the factors influencing detection probabilities and occupancy of six sympatric bats species and provide insight into habitat use patterns. The third examines spatial and temporal activity patterns and investigates species interactions. This study can provide understanding into the secretive and poorly understood patterns of free flying bats across the landscape. It can also deliver useful information to land managers regarding potential changes in landscape practices for the conservation of bat species.
- The Biodiversity Mirage: the Effects of Habitat Degradation and Exotic Predators on Ground-Dwelling Forest Birds, Tenrecs and Lemurs in Northeastern MadagascarMurphy, Asia J. (Virginia Tech, 2015-06-03)Madagascar is one of the world's top conservation priorities due to the intense anthropogenic pressures on its diverse and endemic wildlife. There have been very few studies conducted in the largest protected area complex in Madagascar, the Masoala-Makira landscape (northeastern Madagascar). My goal was to examine the response of ground-dwelling forest birds, tenrecs (Lipotyphla: Tenrecidae) and lemurs to habitat degradation and the presence of exotic predators, and monitor population trends at resurveyed sites from 2008 to 2013. Using camera trap surveys and distance sampling, we observed 26 bird species (n = 4,083 observations), three spiny tenrec species (n = 244 observations) and 12 lemur species (n = 1,172 observations). Out of 13 focal species (seven bird, three tenrec and three lemur species), seven had higher point estimates of occupancy or density at intact forests when compared to intermediately degraded or degraded forest sites. Common tenrecs (Tenrec ecaudatus) and cathemeral lemurs changed their activity patterns, becoming more nocturnal in degraded forests. Feral cat (Felis sp.) trap success was negatively related to the detection of three bird species (red-breasted coua, Coua serriana; scaly ground-roller, Geobiastes squamiger; and Madagascar crested ibis, Lophotibis cristata). At two resurveyed sites (S02 and S05), out of 19 and 17 species, only four and eight species did not show consistent declines in occupancy or encounter rates, respectively, over a six-year period. This research highlights the urgent need for immediate conservation action in the Masoala-Makira protected area complex in order to protect one of the world's biodiversity hotspots.
- Black bears in Canyon de Chelly National Monument: Life in a changing environmentTredick, Catherine Anne (Virginia Tech, 2011-06-23)Understanding how wildlife utilize habitat at varying scales is important for understanding and predicting potential impacts of landscape changes (e.g., habitat loss and fragmentation, restoration efforts, climate change, etc.) and in determining effective strategies for conservation and management. This research examines fine-scale and landscape-level habitat use of black bears in Canyon de Chelly National Monument (CACH), Arizona, USA in the context of large-scale landscape change. Currently, CACH is undergoing a large-scale restoration effort to remove all of the non-native Russian olive (Elaeagnus angustifolia) and tamarisk (Tamarix ramosissima and T. chinensis) within the monument. As black bears rely on the Russian olive as a primary food source, a major goal of this research was to evaluate how bears currently use this resource and how its removal might affect bear habitat use and bear-human interactions within the monument. I developed a model of 3rd order (fine-scale) black bear habitat use in CACH using an occupancy modeling approach. Model results indicated that fine-scale habitat selection by bears in CACH is being driven by the presence of non-native Russian olive as well as native food sources. Thus availability of native foods may be sufficient to maintain the bear population in CACH, and bears may quickly adapt to the loss of the non-native food source. Similarly, results showed that bears avoid human areas and farmsteads and prefer higher elevations, suggesting that once olive is removed in the lower canyons near human areas, bear-human interactions may become less of a problem over the long term. I also developed a model of 2nd order (landscape-level) habitat use and evaluated movement patterns of black bears in CACH using location data collected from GPS collars. Model results showed that bears selected areas with higher tree canopy cover and terrain ruggedness, indicating that forest cover and escape cover are primary factors driving black bear habitat selection at the landscape scale in this region. Movement patterns revealed large mean daily movements and low average turning angles, indicating long, linear movements designed to take advantage of the mosaic of available habitats and food resources available over larger areas. I extracted DNA from hair samples collected throughout the study area to examine genetic variability and population structure of black bears in the region. Analyses revealed a relatively healthy, panmictic population across the wider landscape. No substantial genetic structuring was observed in multiple analyses, though I did find evidence of a slight isolation-by-distance pattern within the population. Measures of both current (Nb = 24) and long-term (Ne = 579) effective population size indicated a relatively high number of breeders in the current population and a sufficient amount of gene flow within the larger "superpopulation" to maintain long-term genetic viability. I focused the final portion of my dissertation research on understanding the factors that influence stakeholder acceptance capacity for black bears, which plays a central role in contemporary wildlife management issues, including human-wildlife conflict. I used data from telephone interviews of 1,546 residents in Virginia to develop conceptual models of black bear acceptance capacity at both county and state levels. Model results suggested that more deep-seated and less easily influenced factors (e.g., values and risk perceptions) are at the heart of stakeholder attitudes and perceptions of wildlife, making influencing these perceptions more difficult. Agencies can indirectly affect these attitudes and perceptions, however, by targeting more potentially pliable factors related to wildlife acceptance capacity such as knowledge, personal experience with wildlife, and trust in management agencies.
- Building a Predictive Model of Delmarva Fox Squirrel (Sciurus niger cinereus) Occurrence Using Infrared PhotomonitorsMorris, Charisa Maria (Virginia Tech, 2006-09-11)Habitat modeling can assist in managing potentially widespread but poorly known biological resources such as the federally endangered Delmarva fox squirrel (DFS; Sciurus niger cinereus). The ability to predict or identify suitable habitat is a necessary component of this species' recovery. Habitat identification is also an important consideration when evaluating impacts of land development on this species distribution, which is limited to the Delmarva Peninsula. The goal of this study was to build a predictive model of DFS occurrence that can be used towards the effective management of this species. I developed 5 a'priori global models to predict DFS occurrence based on literature review, past models, and professional experience. I used infrared photomonitors to document habitat use of Delmarva fox squirrels at 27 of 86 sites in the southern Maryland portion of the Delmarva Peninsula. All data were collected on the U.S. Fish and Wildlife Service Chesapeake Marshlands National Wildlife Refuge in Dorchester County, Maryland. Preliminary analyses of 27 DFS present (P) and 59 DFS absent (A) sites suggested that DFS use in my study area was significantly (Wilcoxon Mann-Whitney, P < 0.10) correlated with tree stems > 50 cm dbh/ha (Pmean = 16 + 3.8, Amean = 8+ 2.2), tree stems > 40 cm dbh/ha (Pmean = 49 + 8.1, Amean = 33 + 5.5), understory height (Pmean = 11 m + 0.8, Amean = 9 m + 0.5), overstory canopy height (Pmean = 31 m + 0.6, Amean = 28 m + 0.6), percent overstory cover (Pmean = 82 + 3.9, Amean = 73 + 3.1), shrub stems/ha (Pmean = 8068 + 3218, Amean = 11,119 + 2189), and distance from agricultural fields (Pmean = 964 m + 10, Amean = 1308 m + 103). Chi-square analysis indicated a correlation with shrub evenness (observed on 7% of DFS present sites and 21% of DFS absent sites). Using logistic regression and the Information Theoretic approach, I developed 7 model sets (5 a priori and 2 post hoc) to predict the probability of Delmarva fox squirrel habitat use as a function of micro- and macro-habitat characteristics. Of over 200 total model arrays tested, the model that fit the statistical, biological, and pragmatic criteria postulated was a post hoc integrated model: DFS use = percent overstory cover + shrub evenness + overstory canopy height. This model was determined to be the best of its subset (wi = 0.54), had a high percent concordance (>75%), a significant likelihood ratio (P = 0.0015), and the lowest AICc value (98.3) observed. Employing this predictive model of Delmarva fox squirrel occurrence can benefit recovery and consultation processes by facilitating systematic rangewide survey efforts and simplifying site screenings.
- Characterizing African Elephant (Loxodonta Africana) Population Dynamics and Distribution in BotswanaBarungwi, Amo Obusitswe (Virginia Tech, 2021-07-29)The African elephant (Loxodonta africana) is an iconic species that is globally threatened. Of the total continental population, 37% is found in Botswana, the highest number and density of elephants in Africa. Elephant management in this country remains challenging and complex as the population estimates and trends calculated by government and independent researchers (from aerial survey data) differ and continue to be highly debated, both locally and internationally. To add more clarity and potentially resolve this ongoing debate, this study evaluates aerial survey data collected by the Botswana government from 1990 to 2012 and compares it with population demographic field data collected in 2019-2020 to assess Botswana's elephant population trend in a multimodal fashion. I used two different methods to evaluate aerial survey count data, the log-linear regression model and the Exponential Growth Space State (EGSS) model. In addition, I used the population demographic field data to estimate the growth rate. From the results, the average annual growth rate from the linear regression and the EGSS were both 6.17%. The growth rate estimated from the population demographics field data was estimated to be 5.17%. The age structure was comprised of the six age classes with a general increase from one age structure to the next as expected with a non significant decline in age class 3 (5-10 years) likely associated with the difficulty in differentiating this age class from the bounding age classes. There were no significant differences in the sex ratio (0.49Males:0.51Females). The age structure remained the same from 2019 to 2020, suggesting no evidence that overharvesting impacted the elephant population age structure in northern Botswana. Range expansion has also been identified with the movement of the elephant population into the southern part of the country by 2012. Analysis of count and demographic data as well as the identification of range expansion suggest that the elephant population is growing at rate close to the maximum growth rate previously identified for this species. Data do not support assertions that the population is negatively impacted through illegal offtake. Independent studies that identify Botswana's elephant population as declining have relied on comparisons that are made between data sets obtained from divergent aerial survey methodology and survey area, elements that confound such conclusions. Estimating population trends and the growth rate of an open population is complex, never-the-less, with population growth potientially derived from both birth and/or external immigation. However, demographic data collected in during this study indicate that the fucundity rate is substantial and likely a dominating driver of the positive population growth trend. Multiple measures of population growth (aerial survey and demographic assessments) also provide the opportunity for cross-validation of derived population trends. Therefore, this study recommends that the Botswana government incorporate population demographic data (i.e., age classes) into their existing monitoring protocols. Longitudinal data collection provides a critical mechanism for understanding population trends over changing environmental dynamics and should be continued. Efforts to modify or change these approaches must employ mechanisms that will account for and standardize for differences in methodology.
- Cheetah of the Serengeti Plains: A home range analysisLaver, Peter Norman (Virginia Tech, 2005-11-11)Cheetah (Acinonyx jubatus) persist under continued conservation threat in small populations mostly in protected areas in an historically reduced geographic range. Home range, a useful trait for threat assessment, species reintroduction, and population estimation, is plastic in cheetah with sizes ranging from 40 km2 to over 1000 km2 depending on location. Previous home range estimates for cheetah used the minimum convex polygon (MCP), assuming asymptotic home ranges and MCP insensitivity to sample size. They reported metrics of home range size and overlap based on only outline methods. I use 6 481 observations of 240 female and 315 male cheetah from > 60 matrilines over 25 years in the Serengeti Plains to investigate lifetime, core, yearly, and seasonal range size with kernel density estimation. I investigate autocorrelation using time to statistical independence of locations. I confront the assumption of asymptotic home ranges by testing the traditional and multiscaled home range predictions and provide a novel method for determining kernel asymptotes. I challenge the notion of Serengeti cheetah as a migratory carnivore with analyses of site fidelity and objectively defined core ranges. I assess year to year and seasonal location shifts, showing that yearly shifting lessens as females age. I provide quantitative evidence for philopatry in female- and juvenile dispersal in male cheetah of the Serengeti Plains. I use simple overlap metrics to show that overlap in lifetime and core ranges is greater in related than unrelated female pairs. I use multi-response permutation procedures (MRPP) to show that overlap in unrelated female pairs varies with season. I use correlation of utilization distributions to show that avoidance is apparent only in unrelated pairs of females. My results call into question previous MCP estimates of cheetah home range size, and provide guidance for future sampling of cheetah locations. My home range results will guide management of this imperiled species and my methodological findings may be general and applicable to a wide range of taxa.
- A Comparative Analysis of Genetic Diversity and Structure in Jaguars (Panthera onca), Pumas (Puma concolor), and Ocelots (Leopardus pardalis) in Fragmented Landscapes of a Critical Mesoamerican Linkage ZoneWultsch, Claudia; Waits, Lisette P.; Kelly, Marcella J. (PLOS, 2016-03-14)With increasing anthropogenic impact and landscape change, terrestrial carnivore populations are becoming more fragmented. Thus, it is crucial to genetically monitor wild carnivores and quantify changes in genetic diversity and gene flow in response to these threats. This study combined the use of scat detector dogs and molecular scatology to conduct the first genetic study on wild populations of multiple Neotropical felids coexisting across a fragmented landscape in Belize, Central America. We analyzed data from 14 polymorphic microsatellite loci in 1053 scat samples collected from wild jaguars (Panthera onca), pumas (Puma concolor), and ocelots (Leopardus pardalis). We assessed levels of genetic diversity, defined potential genetic clusters, and examined gene flow for the three target species on a countrywide scale using a combination of individual- and population-based analyses. Wild felids in Belize showed moderate levels of genetic variation, with jaguars having the lowest diversity estimates (HE = 0.57 ± 0.02; AR = 3.36 ± 0.09), followed by pumas (HE = 0.57 ± 0.08; AR = 4.20 ± 0.16), and ocelots (HE = 0.63 ± 0.03; AR = 4.16 ± 0.08). We observed low to moderate levels of genetic differentiation for all three target species, with jaguars showing the lowest degree of genetic subdivision across the country, followed by ocelots and pumas. Although levels of genetic diversity and gene flow were still fairly high, we detected evidence of fine-scale genetic subdivision, indicating that levels of genetic connectivity for wild felids in Belize are likely to decrease if habitat loss and fragmentation continue at the current rate. Our study demonstrates the value of understanding fine-scale patterns of gene flow in multiple co-occurring felid species of conservation concern, which is vital for wildlife movement corridor planning and prioritizing future conservation and management efforts within human-impacted landscapes.
- Comparing density analyses and carnivore ecology in Madagascar's southeastern rainforestGerber, Brian Daniel (Virginia Tech, 2010-12-07)Madagascar is renowned for its biodiversity, but also for forest loss, fragmentation, and degradation, making it a global conservation priority. With few studies dedicated to Madagascar's carnivores, little is known about their ecology. My objectives were to 1) compare density estimation techniques applicable to enumerating rare and/or elusive carnivores, 2) investigate Malagasy carnivore distributions, abundance and density, and occupancy/use across four sites that vary in forest disturbance, and 3) explore temporal activity patterns of rainforest carnivores. I found the spatially-explicit-capture-recapture models were empirically superior, as they are flexible and account for spatial variation in detection probability and area estimation. I found both endemic and exotic carnivore composition varied among four rainforest sites: Primary, Selectively-logged, Fragments <2.5 km and Fragments >15 km from contiguous-primary rainforest. All endemic carnivores were present in the Primary and Selectively-logged rainforest, while endemic carnivore species richness decreased and exotic carnivore species richness increased in the fragmented forests. Malagasy civet (Fossa fossana) density ± SE was significantly less in the Selectively-logged compared to the Primary rainforest (1.38 ± 0.22, 3.19 ± 0.55 civets/km2, respectively); they were absent from both fragmented forests. Fossa (Cryptoprocta ferox) density ± SE was not different between the Primary and Selectively-logged rainforests (0.12 ± 0.05, 0.09 ± 0.04 adults/km2, respectively); a single animal was detected in the Fragments <2.5 km, while none were detected in the Fragments >15 km. Malagasy carnivores had varied temporal activity overlap (5.8-88.8%). C. ferox preferred crepuscular activity, but overall exhibited a cathemeral activity pattern.
- A Comparison of Systematic Quadrat and Capture-Mark-Recapture Sampling Designs for Assessing Freshwater Mussel PopulationsCarey, Caitlin; Jones, Jess W.; Butler, Robert S.; Kelly, Marcella J.; Hallerman, Eric M. (MDPI, 2019-08-07)Our study objective was to compare the relative effectiveness and efficiency of quadrat and capture-mark-recapture (CMR) sampling designs for monitoring mussels. We collected data on a recently reintroduced population of federally endangered Epioblasma capsaeformis and two nonlisted, naturally occurring species—Actinonaias pectorosa and Medionidus conradicus—in the Upper Clinch River, Virginia, over two years using systematic quadrat and CMR sampling. Both sampling approaches produced similar estimates of abundance; however, precision of estimates varied between approaches, years, and among species, and further, quadrat sampling efficiency of mussels detectable on the substrate surface varied among species. CMR modeling revealed that capture probabilities for all three study species varied by time and were positively associated with shell length, that E. capsaeformis detection was influenced by sex, and that year-to-year apparent survival was high (>96%) for reintroduced E. capsaeformis. We recommend that monitoring projects use systematic quadrat sampling when the objective is to estimate and detect trends in abundance for species of moderate to high densities (>0.2/m2), whereas a CMR component should be incorporated when objectives include assessing reintroduced populations, obtaining reliable estimates of survival and recruitment, or producing unbiased population estimates for species of low to moderate densities (≤0.2/m2).
- Densities, habitat-use, and mesopredator release of the ocelot in BelizeDavis, Miranda L. (Virginia Tech, 2008-05-04)The mesopredator release hypothesis suggests that small carnivore populations are negatively affected by competition with larger carnivore species; this could hinder the conservation of mesopredators in areas where large top-carnivores are prioritized. I investigated the ecology of ocelots in Belize and examined the role of mesopredator release in the neotropical carnivore guild to determine if ocelots are limited by competition with jaguars and pumas. I conducted remote camera surveys and sampled habitat within four protected areas: three broadleaf sites and one pine forest site. I measured ocelot activity and habitat-use with respect to the activity of jaguars and pumas at one broadleaf site and one pine forest site; additionally, I calculated estimates of ocelot and jaguar densities within those two sites. Ocelot presence was positively related to jaguar activity in the pine forest and to both jaguar and puma activity in the broadleaf forest. There were few relationships with habitat characteristics; however, in the broadleaf site, ocelot activity was positively related to road width and large avian prey activity. Both jaguar and ocelot densities were low in the pine forest and higher in the broadleaf site. Preliminary findings from the remaining two sites suggest that future results may be similar to those from the first two sites analyzed. I conclude that ocelot populations are not negatively affected by jaguars and that a negative effect of pumas is unlikely. Results imply that mesopredator release does not limit ocelot populations in these areas.
- Determining Habitat Associations of Virginia and Carolina Northern Flying Squirrels in the Appalachian Mountains from Bioacoustic and Telemetry SurveysDiggins, Corinne Ashley (Virginia Tech, 2016-08-23)The Virginia northern flying squirrel (Glaucomys sabrinus fuscus) and the Carolina northern flying squirrel (G. s. coloratus) are geographically isolated subspecies of the northern flying squirrel found in montane conifer-northern hardwood forests the Appalachian Mountains of the eastern United States. Both subspecies were listed under the Endangered Species Act in 1985 as endangered, and accordingly, the Virginia northern flying squirrel and the Carolina northern flying squirrel are considered high conservation priorities by state and federal agencies. Although the listing prompted work to determine the broad distribution and habitat associations of both subspecies, numerous data gaps remain, particularly with regard to habitat management and development of efficient monitoring techniques. Regional interest in restoration of red spruce (Picea rubens) forests in the central and southern Appalachian Mountains, considered to be the flying squirrels' primary habitat, increases the importance of understanding habitat selection and managers' ability to detect squirrels at multiple spatial and temporal scales. I compared two novel survey techniques (ultrasonic acoustics and camera trapping) to a traditional technique (live trapping) to determine which method had higher probability of detection (POD) and lower latency to detection (LTD, number of survey nights to initial detection) of northern flying squirrels in the region. Both novel techniques performed better than the traditional techniques with higher POD and lower LTD. I found that ultrasonic acoustics and camera trapping had similar POD, whereas LTD was significantly lower with ultrasonic acoustics versus camera trapping. Additionally, the ability to distinguish between northern flying squirrels and the parapatric southern flying squirrel (G. volans) also is possible with ultrasonic acoustics, but not with camera trapping. This ultimately makes ultrasonic acoustics the most effective and efficient method to obtain detection/non-detection data. To better inform management decisions and activities (i.e., red spruce restoration), this method should be used in conjunction with existing traditional monitoring techniques that provide demographic data such as nest boxes. I assessed habitat selection of radio-collared Virginia and Carolina northern flying squirrels at multiple spatial scales with use-availability techniques. I analyzed field data from paired telemetry and random points and determined Virginia northern flying squirrels microhabitat (within-stand habitat) selection showed preference for conifer-dominant stands with deep organic horizons, a factor that might be directly linked to food (hypogeal fungi) availability. Similar to previous studies on the Virginia northern flying squirrel on the landscape- and stand-level using Euclidean distance based analysis, Carolina northern flying squirrels also selectively preferred montane conifer forests in greater proportion than their availability on the landscape. Additionally, Carolina northern flying squirrels did not select for or against northern hardwood forests regardless of availability on the landscape. Habitat preference of both subspecies indicates that red spruce restoration activities may be important for the persistence of Appalachian northern flying squirrels into an uncertain future, as anthropogenic climate change may cause further reduction of the quality and extent of high-elevation montane conifer forests in the region.
- Development and application of a multistate model to the northern subpopulation of loggerhead sea turtlesHedges, Melissa Elizabeth (Virginia Tech, 2007-04-23)Loggerhead sea turtles (Caretta caretta) are listed as threatened under the Endangered Species Act and are protected both on nesting beaches and in United States waters. Loggerhead sea turtles are long-lived species and are most easily studied on the beaches during the nesting season. Bald Head Island, North Carolina has one of the highest density nesting beaches of loggerhead sea turtles in the turtle's northern range on the East Coast of the United States. Key life history parameters were estimated and applied to a population model using 16 years of data from a mark-recapture study on the loggerhead sea turtle nesting population on Bald Head Island, North Carolina. The beach survey conducted on the island only allowed for the capture of adult female sea turtles during the breeding state even though females may spend multiple years in the unobservable non-breeding state. The majority of females captured over the last 16 years have never been recaptured at the original capture site. These transients in the data coupled with unobservable states violate the assumption of equal catchability in the available single state mark-recapture models. Therefore, a multistate mark- recapture model originally developed for leatherback sea turtles was applied to the Bald Head Island loggerhead population. Multistate modeling provides a new technique to estimate sea turtle demographic parameters in which all model assumptions can be met. The multistate model outputs female survival rates, capture probability, and transition probabilities between breeding and non-breeding states. A correction factor for trap-dependence and transients was included given that both factors tested significant in the global model goodness-of-fit tests. The estimates of annual adult survival rate and breeding transitions were then used to project population size for the northern subpopulation. For the first time, estimation error around estimates of benthic juvenile and adult survival rates was included in a loggerhead sea turtle model. I explored the effects of estimation error, three levels of clutch frequency, and larger TED openings on population growth rate and on the probability of reaching a nesting recovery threshold. The nesting recovery threshold was based upon recovery criteria from the Federal Recovery Plan and set as the probability of reaching 12,800 nests/season in the states of North Carolina, South Carolina, and Georgia within a 50 year time period. The results of this study provide important information to guide future management and research.
- Diet and Feeding Ecology of the Coyotes, Black Bears, and Bobcats in Western Virginia and Preliminary Assessment of Coyote ParasitesMontague, David Miles (Virginia Tech, 2014-10-22)Although deer abundance is high throughout most areas of Virginia, parts of western Virginia, especially on public lands, have comparatively low density deer populations. Concerns voiced by sportsmen regarding declining deer numbers in this region prompted interest in research to investigate the role of predation on deer populations. The coyote (Canis latrans) is a relative newcomer to Virginia, and relatively little is known about the role coyotes play in Virginia ecosystem dynamics, including their interactions with other sympatric predators. Research studies in other areas suggest that predation from coyotes, bobcats (Lynx rufus), and black bears (Ursus americanus) may be a significant source of deer (Odocoileus virginianus) mortality, especially for fawns, and the cumulative effects of predation from these sources may also increase the potential for additive mortality in deer populations. An important consideration when comparing feeding strategies of carnivores is the relative availability of food items across the landscape. I estimated the relative seasonal availability of several potential food items in a mosaic landscape that included some areas of prescribed burning and variable timber harvest in the mountains of western Virginia between June 2011 and May 2013. I focused on 4 broad categories of food items: white-tailed deer, mid-sized mammals (raccoons, Procyon lotor, opossums, Didelphis virginiana, cottontails, Sylvilagus spp., and squirrels, Sciurus spp.), small mammals, and soft mast. I used distance sampling to estimate deer density, camera trapping techniques to estimate mid-sized mammal trapping rates and occupancy, mark-recapture techniques to estimate small mammal abundance, and vegetation sampling to estimate % cover, which I used as measures of food availability for predation. To estimate carnivore diet, I analyzed scats of coyotes (n = 334), bobcats (n = 258), and black bears (n = 107) collected monthly from June 2011 and May 2013. Additionally, I compared estimates of % occurrence to estimates of seasonal availability of deer, mid-sized mammals, small mammals, and soft mast by ranking availability of food items from 0 (unavailable) to 4 (highly available) from my monthly and seasonal food item abundance and density estimates. I then ranked % occurrence in scat on a 0 - 4 scale and compared diet rankings to food item availability where changes in rank indicate differences from the generalist diet. Deer densities were substantially higher in Bath County (4.75 - 16.06 deer/km²) than in Rockingham County (0.17 - 3.55 deer/km²). I estimated availability of other food items only in Bath County. For mid-sized mammals, I estimated low activity as shown by constant, but low, trapping rates (#photo events/trap nights*100) of opossums, and relatively higher, constant trapping rates of cottontails. Raccoon and squirrel trapping rates were highly variable across seasons and raccoon occupancy (proportion of sites occupied) was higher in summer and fall (0.51 - 0.59) whereas squirrel occupancy was highest in October-November (0.51 - 0.53). Cottontail and opossum occupancies were higher in burned areas (0.40 - 0.57, 0.24 - 0.46, respectively), whereas raccoon and gray squirrel occupancies were higher in unburned areas (0.23 - 0.78, 0.12 - 0.58, respectively). Using program MARK I estimated high abundance and density of Peromyscus spp. in all seasons relative to other small mammal species. Densities of meadow voles and jumping mice were high seasonally in open field habitat. Densities of eastern chipmunks, red-backed voles, and Peromyscus spp. were significantly higher in burned areas relative to unburned sites. Among soft mast species, blueberries comprised the largest % occurrence. I expect a generalist predator to consume deer at a constant rate and have lower % deer occurrence in Rockingham County where deer densities are much lower. I expect seasonally constant, but low, occurrence of opossum and relatively higher, but similarly constant, occurrence of cottontail. I expect raccoon occurrence to be relatively high in summer and fall, and lower in winter. Squirrel occurrence should peak in October and November, followed by a steady decline until June. Based on availability, Peromyscus spp. should be the most commonly occurring small mammal in the diet of a generalist predator, rivaled by meadow voles (Clethrionomys gapperi) in fall and perhaps summer. I expect chipmunks (Tamias striatus) and red-backed voles to occur at constant but low rates in predator diets. I predict that various species of soft mast may occur during their respective fruiting seasons. Deer were the most frequently occurring food item of coyotes in all months in both counties, with % biomass consumed highest in June (Bath: 60.0 - 90.9 %; Rockingham: 55.6 - 92.3%). Deer occurrence in bobcat scat peaked in June (77.54 %). In black bear scat, deer occurrence was highest in February and March (100 %), however sample sizes in these months were extremely low (n = 2, 3 respectively). All 3 predators consumed deer more than expected in June and July. In most months, coyotes consumed deer and soft mast more often than expected (1 rank higher) and they consumed deer much higher (2-3 ranks higher) than expected in January and February. While deer was a major food item in the diets of all 3 predators, it is unclear whether this observed result was caused by predation or scavenging. It is unlikely that coyotes, bears, or bobcats are preying on adult deer with high frequency. I did not estimate the availability of deer carcasses for scavenging in this study. If deer carcasses are highly available in the study area, this may explain the high occurrence of deer in carnivore scat and the lack of seasonality in coyote samples. Mice (Peromyscus spp.) were consumed by predators less than expected based on availability, whereas squirrels and chipmunks were consumed by bobcats more than expected. Meadow and red-backed voles were consumed more than expected by both bobcats and coyotes. Mid-sized mammals occurred with expected frequency or lower in predator scats. Coyotes had the lowest diversity and variation in diet, whereas bobcat and bear diets were more diverse including seasonal use of many species. Coyotes exhibited more selectivity (based on changes, and magnitude of changes, in rankings for food item occurrence versus availability) and appear more specialized on deer in all months than bobcats. I analyzed 203 randomly-selected coyote fecal samples using a modified Wisconsin fecal flotation technique. I identified 13 parasite taxa, 9 of which occurred with adequate frequency to permit statistical analysis. No landscape patterns or statistically significant seasonal differences were found in prevalence of parasite taxa, and only A. caninum and Eimeria spp. were significantly higher, and Cystoisospora spp. was somewhat significantly higher, in Bath versus Rockingham Counties. By comparing my data on spatio-temporal patterns of food availability to patterns in the scats of predators, we have better understanding of predator foraging strategies and can identify opportunities for targeted management to balance predator-prey dynamics with human needs and values. More research is needed on the interactions of sympatric predators in specific areas to gain further inferences regarding population-level impacts of predation on deer in western Virginia.