Browsing by Author "Sokol, Eric R."

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    Community ecology of aquatic insects in forested headwater streams in the southern Appalachians
    Sokol, Eric R. (Virginia Tech, 2009-09-04)
    Competing paradigms of community assembly emphasize different mechanisms for predicting patterns in biogeography. Niche assembly emphasizes the role of environmental gradients as filters that organize a metacommunity by locally selecting colonizers with similar functional traits, whereas dispersal assembly emphasizes the importance of source pool characteristics and dispersal limitation in organizing a metacommunity. In this study, I developed a framework that uses spatially explicit patterns in taxonomic and functional measures of community composition as diagnostics for community assembly processes for benthic macroinvertebrates in headwater streams in the southern Appalachians. Distance decay in taxonomic and functional similarity was used to determine the scales at which taxonomic turnover occurred within functional niches. Trait-neutral models of community composition were used as null models to assess which functional traits were the best candidates to explain how community composition was influenced by environmental gradients: an assessment of niche-based community assembly. Regional scale patterns suggested that niche-based community assembly was the dominant mechanism organizing community composition in headwater streams at local scales (<30km). Therefore, I compared how well trait-neutral models identified functional traits as relevant to community sorting against how well observed trait distributions correlated with environmental variation at a local scale, in the Ray Branch catchment (<10km study extent). Functional traits exhibiting non-random distributions within the Ray Branch watershed were most strongly correlated with environmental variation. Lastly, I assessed how the influences of niche and dispersal assembly on benthic macroinvertebrate community composition were affected by disturbance (shelterwood logging). Environmental variables defining the habitat template, and macroinvertebrate community composition, were measured before and after the disturbance; and path analysis was used to quantify the disturbance effect. The relationship between environmental variation and functional composition increased following logging, indicating disturbance augmented the influence of environmental filters, and consequently, the importance of niche-based community assembly. My dissertation provides the framework for a novel assessment of taxonomic and functional community composition data to infer the types of ecological dynamics that organize communities in the landscape. Additionally, this work provides a theoretical basis for assessing how dominant ecological processes change, in predictable ways, in response to changes in the habitat template.
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    The Distribution of Surface Soil Moisture over Space and Time in Eastern Taylor Valley, Antarctica
    Salvatore, Mark R.; Barrett, John E.; Fackrell, Laura E.; Sokol, Eric R.; Levy, Joseph S.; Kuentz, Lily C.; Gooseff, Michael N.; Adams, Byron J.; Power, Sarah N.; Knightly, J. Paul; Matul, Haley M.; Szutu, Brian; Doran, Peter T. (MDPI, 2023-06-18)
    Available soil moisture is thought to be the limiting factor for most ecosystem processes in the cold polar desert of the McMurdo Dry Valleys (MDVs) of Antarctica. Previous studies have shown that microfauna throughout the MDVs are capable of biological activity when sufficient soil moisture is available (~2–10% gravimetric water content), but few studies have attempted to quantify the distribution, abundance, and frequency of soil moisture on scales beyond that of traditional field work or local field investigations. In this study, we present our work to quantify the soil moisture content of soils throughout the Fryxell basin using multispectral satellite remote sensing techniques. Our efforts demonstrate that ecologically relevant abundances of liquid water are common across the landscape throughout the austral summer. On average, the Fryxell basin of Taylor Valley is modeled as containing 1.5 ± 0.5% gravimetric water content (GWC) across its non-fluvial landscape with ~23% of the landscape experiencing an average GWC > 2% throughout the study period, which is the observed limit of soil nematode activity. These results indicate that liquid water in the soils of the MDVs may be more abundant than previously thought, and that the distribution and availability of liquid water is dependent on both soil properties and the distribution of water sources. These results can also help to identify ecological hotspots in the harsh polar Antarctic environment and serve as a baseline for detecting future changes in the soil hydrological regime.
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    Evaluating Alternative Metacommunity Hypotheses for Diatoms in the McMurdo Dry Valleys Using Simulations and Remote Sensing Data
    Sokol, Eric R.; Barrett, John E.; Kohler, Tyler J.; McKnight, Diane M.; Salvatore, Mark R.; Stanish, Lee F. (2020-09-25)
    Diatoms are diverse and widespread freshwater Eukaryotes that make excellent microbial subjects for addressing questions in metacommunity ecology. In the McMurdo Dry Valleys of Antarctica, the simple trophic structure of glacier-fed streams provides an ideal outdoor laboratory where well-described diatom assemblages are found within two cyanobacterial mat types, which occupy different habitats and vary in coverage within and among streams. Specifically, black mats ofNostocspp. occur in marginal wetted habitats, and orange mats (Oscillatoriaspp. andPhormidiumspp.) occur in areas of consistent stream flow. Despite their importance as bioindicators for changing environmental conditions, the role of dispersal in structuring dry valley diatom metacommunities remains unclear. Here, we use MCSim, a spatially explicit metacommunity simulation package for R, to test alternative hypotheses about the roles of dispersal and species sorting in maintaining the biodiversity of diatom assemblages residing in black and orange mats. The spatial distribution and patchiness of cyanobacterial mat habitats was characterized by remote imagery of the Lake Fryxell sub-catchment in Taylor Valley. The available species pool for diatom metacommunity simulation scenarios was informed by the Antarctic Freshwater Diatoms Database, maintained by the McMurdo Dry Valleys Long Term Ecological Research program. We used simulation outcomes to test the plausibility of alternative community assembly hypotheses to explain empirically observed patterns of freshwater diatom biodiversity in the long-term record. The most plausible simulation scenarios suggest species sorting by environmental filters, alone, was not sufficient to maintain biodiversity in the Fryxell Basin diatom metacommunity. The most plausible scenarios included either (1) neutral models with different immigration rates for diatoms in orange and black mats or (2) species sorting by a relatively weak environmental filter, such that dispersal dynamics also influenced diatom community assembly, but there was not such a strong disparity in immigration rates between mat types. The results point to the importance of dispersal for understanding current and future biodiversity patterns for diatoms in this ecosystem, and more generally, provide further evidence that metacommunity theory is a useful framework for testing hypotheses about microbial community assembly.
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    Local and regional influences over soil microbial metacommunities in the Transantarctic Mountains
    Sokol, Eric R.; Herbold, C. W.; Lee, C. K.; Cary, S. Craig; Barrett, John E. (Ecological Society of America, 2013-11)
    The metacommunity concept provides a useful framework to assess the influence of local and regional controls over diversity patterns. Culture-independent studies of soil microbial communities in the McMurdo Dry Valleys of East Antarctica (77 degrees S) have shown that bacterial diversity is related to soil geochemical gradients, while studies targeting edaphic cyanobacteria have linked local diversity patterns to dispersal-based processes. In this study, we increased the spatial extent of observed soil microbial communities to cover the Beardmore Glacier region in the central Transantarctic Mountains (84 degrees S). We used community profiling techniques to characterize diversity patterns for bacteria and the cyanobacterial subcomponent of the microbial community. Diversity partitioning was used to calculate beta diversity and estimate among-site dissimilarity in the metacommunity. We then used variation partitioning to assess the relationship between beta diversity and environmental and spatial gradients. We found that dominant groups in the soil bacterial metacommunity were influenced by gradients in pH and soil moisture at the Transantarctic scale (800 km). Conversely, beta diversity for the cyanobacterial component of the edaphic microbial metacommunity was decoupled from these environmental gradients, and was more related to spatial filters, suggesting that wind-driven dispersal dynamics created cyanobacterial biogeography at a local scale (<3 km).
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    The NEON Ecological Forecasting Challenge
    Thomas, R. Quinn; Boettiger, Carl; Carey, Cayelan C.; Dietze, Michael C.; Johnson, Leah R.; Kenney, Melissa A.; McLachlan, Jason S.; Peters, Jody A.; Sokol, Eric R.; Weltzin, Jake F.; Willson, Alyssa; Woelmer, Whitney M. (Wiley, 2023-04)
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    Remote characterization of Antarctic microbial mat communities
    Power, Sarah N.; Salvatore, Mark R.; Sokol, Eric R.; Stanish, Lee F.; Barrett, John E. (Virginia Tech, 2021-04-30)
    The McMurdo Dry Valleys, Antarctica are ecosystems where life approaches its environmental limits. Cyanobacteria, however, have adapted to survive in this extreme environment as the most dominant life form and the main drivers of primary productivity (i.e., photosynthesis). Cyanobacterial communities exist on soil surfaces adjacent to glacial meltwater streams layered in mats up to several cm thick. The cryptic nature of these communities and their patchy distribution make assessments of productivity challenging. We used satellite imagery coupled with in situ surveying, imaging, and sampling to systematically estimate microbial mat biomass in selected wetland regions in Taylor Valley, Antarctica. On January 19th, 2018, the WorldView-2 multispectral satellite acquired an image of our study areas, where we surveyed and sampled seven 100 m2 plots of microbial mats for percent ground cover, ash-free dry mass, and pigment content. Multispectral analyses revealed spectral signatures consistent with photosynthetic activity (relatively strong reflection at near-infrared wavelengths and relatively strong absorption at visible wavelengths), with average NDVI values of 0.09 to 0.28. Strong correlations of microbial mat ground cover (R2 = 0.84), biomass (R2 = 0.74), chlorophyll-a content (R2 = 0.65), and scytonemin content (R2 = 0.98) with logit transformed NDVI values demonstrate that satellite imagery can detect both the presence of microbial mats and their key biological properties. Using the NDVI – biomass correlation we developed, we estimate carbon (C) stocks of 21,715 kg (14.7 g C m-2) in the Canada Glacier Antarctic Specially Protected Area. By quantitatively comparing biological surface observations to NDVI, this is the first satellite-derived estimate of microbial mat biomass for this region of Antarctica.
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    Spatial scale and structure of complex life cycle trematode parasite communities in streams
    Zemmer, Sally A.; Detwiler, Jillian T.; Sokol, Eric R.; Da Silva Neto, Jeronimom G.; Wyderko, Jennie A.; Potts, Kevin; Gajewski, Zachary J.; Sarment, Lea V.; Benfield, Ernest F.; Belden, Lisa K. (PLOS, 2020-11-24)
    By considering the role of site-level factors and dispersal, metacommunity concepts have advanced our understanding of the processes that structure ecological communities. In dendritic systems, like streams and rivers, these processes may be impacted by network connectivity and unidirectional current. Streams and rivers are central to the dispersal of many pathogens, including parasites with complex, multi-host life cycles. Patterns in parasite distribution and diversity are often driven by host dispersal. We conducted two studies at different spatial scales (within and across stream networks) to investigate the importance of local and regional processes that structure trematode (parasitic flatworms) communities in streams. First, we examined trematode communities in first-intermediate host snails (Elimia proxima) in a survey of Appalachian headwater streams within the Upper New River Basin to assess regional turnover in community structure. We analyzed trematode communities based on both morphotype (visual identification) and haplotype (molecular identification), as cryptic diversity in larval trematodes could mask important community-level variation. Second, we examined communities at multiple sites (headwaters and main stem) within a stream network to assess potential roles of network position and downstream drift. Across stream networks, we found a broad scale spatial pattern in morphotype- and haplotype-defined communities due to regional turnover in the dominant parasite type. This pattern was correlated with elevation, but not with any other environmental factors. Additionally, we found evidence of multiple species within morphotypes, and greater genetic diversity in parasites with hosts limited to instream dispersal. Within network parasite prevalence, for at least some parasite taxa, was related to several site-level factors (elevation, snail density and stream depth), and total prevalence decreased from headwaters to main stem. Variation in the distribution and diversity of parasites at the regional scale may reflect differences in the abilities of hosts to disperse across the landscape. Within a stream network, species-environment relationships may counter the effects of downstream dispersal on community structure.
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    Trends in Stream Biodiversity Research since the River Continuum Concept
    Tornwall, Brett M.; Sokol, Eric R.; Skelton, James; Brown, Bryan L. (MDPI, 2015-02-09)
    Lotic environments contain a disproportionate amount of biodiversity given their relatively small proportion of the worldwide landscape. We conducted a systematic literature search of research directed towards understanding factors that influence biodiversity in lotic habitats, published in 31 major ecological and freshwater science journals from 1981 to 2014. Our goal was to characterize emergent themes in research successes and identify important areas in need of study. We show an overwhelming taxonomic bias favoring studies of macroinvertebrates and fish, and a paucity in studies of other important groups such as bacteria and fungi. While most studies assessed habitat variables that affect diversity at a local scale, there has been a recent push to investigate regional drivers of beta and gamma diversity. Several factors were consistently found to be important drivers of diversity including local habitat type, hydrologic variables, disturbance, and stream morphometry. Others such as nutrients and chemical variables showed mixed support. Species interactions, dispersal, and evolutionary processes were rarely considered but show promise as fruitful areas for future study. We suggest that researchers should give increased attention to diversity drivers at different scales as well as take advantage of new molecular techniques to address questions regarding organismal diversity in streams.