Browsing by Author "Wu, J."

Now showing 1 - 3 of 3
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    Analysis of horse genomes provides insight into the diversification and adaptive evolution of karyotype
    Huang, J. L.; Zhao, Y. P.; Shiraigol, W.; Li, B.; Bai, D. Y.; Ye, W. X.; Daidiikhuu, D.; Yang, L. H.; Jin, Brqqg; Zhao, Q. A.; Gao, Y. H.; Wu, J.; Bao, Wydl; Li, A. A.; Zhang, Y. H. Percival; Han, H. G.; Bai, H. T.; Bao, Y. Q.; Zhao, L. L.; Zhai, Z. X.; Zhao, W. J.; Sun, Z. K.; Zhang, Y.; Meng, H.; Dugarjaviin, M. (Nature Publishing Group, 2014-05)
    Karyotypic diversification is more prominent in Equus species than in other mammals. Here, using next generation sequencing technology, we generated and de novo assembled quality genomes sequences for a male wild horse (Przewalski's horse) and a male domestic horse (Mongolian horse), with about 93-fold and 91-fold coverage, respectively. Portion of Y chromosome from wild horse assemblies (3 M bp) and Mongolian horse (2 M bp) were also sequenced and de novo assembled. We confirmed a Robertsonian translocation event through the wild horse's chromosomes 23 and 24, which contained sequences that were highly homologous with those on the domestic horse's chromosome 5. The four main types of rearrangement, insertion of unknown origin, inserted duplication, inversion, and relocation, are not evenly distributed on all the chromosomes, and some chromosomes, such as the X chromosome, contain more rearrangements than others, and the number of inversions is far less than the number of insertions and relocations in the horse genome. Furthermore, we discovered the percentages of LINE_L1 and LTR_ERV1 are significantly increased in rearrangement regions. The analysis results of the two representative Equus species genomes improved our knowledge of Equus chromosome rearrangement and karyotype evolution.
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    Development of a nonlinear nanoprobe for interferometric autocorrelation based characterization of ultrashort optical pulses
    Li, H. F.; Jia, Y. S.; Xu, Q.; Shi, K. B.; Wu, J.; Eklund, P. C.; Xu, Yong; Liu, Z. W. (AIP Publishing, 2010-01-01)
    Near-field scanning can achieve nanoscale resolution while ultrashort pulse diagnostic tools can characterize femtosecond pulses. Yet currently it is still challenging to nonperturbatively characterize the near field of an ultrashort optical pulse with nanofemtoscale spatiotemporal resolution. To address this challenge, we propose to develop a nonlinear nanoprobe composed of a silica fiber taper, a nanowire, and nonlinear fluorescent spheres. Using such a nanoprobe, we also report proof-of-principle characterization of femtosecond optical pulse through interferometric autocorrelation measurement.
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    miRNA Genes of an Invasive Vector Mosquito, Aedes albopictus
    Gu, J.; Hu, W.; Wu, J.; Zheng, P.; Chen, M.; James, A. A.; Chen, X.; Tu, Zhijian Jake (PLOS, 2013-07-01)
    Aedes albopictus, a vector of Dengue and Chikungunya viruses, is a robust invasive species in both tropical and temperate environments. MicroRNAs (miRNAs) regulate gene expression and biological processes including embryonic development, innate immunity and infection. While a number of miRNAs have been discovered in some mosquitoes, no comprehensive effort has been made to characterize them from different developmental stages from a single species. Systematic analysis of miRNAs in Ae. albopictus will improve our understanding of its basic biology and inform novel strategies to prevent virus transmission. Between 10–14 million Illumina sequencing reads per sample were obtained from embryos, larvae, pupae, adult males, sugar-fed and blood-fed adult females. A total of 119 miRNA genes represented by 215 miRNA or miRNA star (miRNA*) sequences were identified, 15 of which are novel. Eleven, two, and two of the newly-discovered miRNA genes appear specific to Aedes, Culicinae, and Culicidae, respectively. A number of miRNAs accumulate predominantly in one or two developmental stages and the large number that showed differences in abundance following a blood meal likely are important in blood-induced mosquito biology. Gene Ontology (GO) analysis of the targets of all Ae. albopictus miRNAs provides a useful starting point for the study of their functions in mosquitoes. This study is the first systematic analysis of miRNAs based on deep-sequencing of small RNA samples of all developmental stages of a mosquito species. A number of miRNAs are related to specific physiological states, most notably, pre- and post-blood feeding. The distribution of lineagespecific miRNAs is consistent with mosquito phylogeny and the presence of a number of Aedes-specific miRNAs likely reflects the divergence between the Aedes and Culex genera.