Browsing by Author "Zhang, Man"
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- A comprehensive investigation of Bronze Age human dietary strategies from different altitudinal environments in the Inner Asian Mountain CorridorWang, Wei; Liu, Yi; Duan, Futao; Zhang, Jie; Liu, Xinyi; Reid, Rachel E. B.; Zhang, Man; Dong, Weimiao; Wang, Yongqiang; Ruan, Qiurong; Li, Wenying; An, Cheng-Bang (2020-09)The early presence of crops from East Asia and Southwest Asia in the Inner Asian Mountain Corridor (IAMC) has drawn attention to the Bronze Age mountain archaeology of Central Asia. Namely, the Bronze Age diffusion and utilization of grains in this region remains unknown as contrasts and extremes characterize the territory in environmental terms, especially elevation. Researchers continue to reflect on how, during the second millennium BC, Bronze Age populations used new crops and local animal resources to adapt to different elevation environments of the IAMC. In this study, we analyzed the 41 latest stable carbon and nitrogen isotopic results from human and faunal bones from six Bronze Age sites in the IAMC, 261 previously published stable isotopic datasets, and 12 archaeobotanical and four zooarchaeological results to investigate the dietary strategies of populations from different elevation environments in the Bronze Age IAMC. The results show an altitudinal gradient in dietary choices among Bronze Age populations in the IAMC, with mixed C-4 and C-3 consumption at the low-mid elevations and notable C-3 consumption at the high elevations. Archaeobotanical and faunal remains also support these isotopic results. Our study further highlights that the differentiated dietary strategies adopted by the Bronze Age population in IAMC may have been the product of adaptation to local geographic environments. Social interaction may have also played a role in certain types of special dietary consumption.
- Genomics of Climatic Adaptation in Populus TrichocarapaZhang, Man (Virginia Tech, 2016-08-10)Temperate tree species exhibit seasonal growth cycling, and the timing of such transition varies with local climate. Under anthropogenic climate change, the local pattern of growth and dormancy in tree populations is expected to become uncoupled with shifting seasonal environmental signals, particularly temperature. Thus, an understanding of the genetic underpinnings of local adaptation is key to predicting the fate of tree populations in the future. In this thesis, we coupled sampling of range-wide natural accessions of P. trichocarpa with adaptive trait phenotyping and genome-wide genotyping to uncover relationships between genotype, phenotype, and environment. We detected strong correlations between adaptive phenotypes, climate, and geography, which suggested climatic selection driving adaptation of these populations to local environments. We subsequently combined genotype-phenotype association tests with sliding window analysis and identified regions strongly associated with these adaptive traits. We also compared adaptive markers identified in two independent GWAS on samples across latitude and altitude transects and found a set of associated variants shared across both transects. We further scanned the genome with three selection tests to identify regions showing evidence of recent positive and divergent selection. By comparing candidate selection regions across altitude and latitude, we detected a set of overlapping regions showing differentiation across gradients of the same climate variables. We validated the functional imortance of these selection regions by combining GWAS and showed that selection regions contain a strong signature of phenotypic associations. We also studied the distribution of deleterious allels across genome and natural populations, and found that deleterious alleles preferentially accumulate in regions of low recombination and hithihking regions. Finally, marginal populations contained more deleterious alleles compared with central populations, which is likely due to ineffective selection in small populations and recent bottlenecks associated with postglacial recolonization. These findings provide new insights into the genomic architecture underlying climatic adaptation and how selection drives adaptive evolution of tree species.
- Phenotypic and Genomic Local Adaptation across Latitude and Altitude in Populus trichocarpaZhang, Man; Suren, Haktan; Holliday, Jason A. (Oxford University Press, 2019-07-10)Local adaptation to climate allows plants to cope with temporally and spatially heterogeneous environments, and parallel phenotypic clines provide a natural experiment to uncover the genomic architecture of adaptation. Though extensive effort has been made to investigate the genomic basis of local adaptation to climate across the latitudinal range of tree species, less is known for altitudinal clines. We used exome capture to genotype 451 Populus trichocarpa genotypes across altitudinal and latitudinal gradients spanning the natural species range, and phenotyped these trees for a variety of adaptive traits in two common gardens. We observed clinal variation in phenotypic traits across the two transects,which indicates climate-driven selection, and coupled gene-based genotype–phenotype and genotype–environment association scans to identify imprints of climatic adaptation on the genome. Although many of the phenotype-and climate-associated genes were unique to one transect, we found evidence of parallelism between latitude and altitude, as well as significant convergence when we compared our outlier genes with those putatively involved in climatic adaptation in two gymnosperm species. These results suggest that not only genomic constraint during adaptation to similar environmental gradients in poplar but also different environmental contexts, spatial scale, and perhaps redundant function among potentially adaptive genes and polymorphisms lead to divergent adaptive architectures.