College of Engineering (COE): Recent submissions
Now showing items 1-20 of 3087
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H++: a server for estimating pK(a)s and adding missing hydrogens to macromolecules
(2005-07-01)The structure and function of macromolecules depend critically on the ionization (protonation) states of their acidic and basic groups. A number of existing practical methods predict protonation equilibrium pK constants ... -
VMD: a community annotation database for oomycetes and microbial genomes
(2006-01-01)The VBI Microbial Database (VMD) is a database system designed to host a range of microbial genome sequences. At present, the database contains genome sequence and annotation data of two plant pathogens Phytophthora sojae ... -
VIRGO: computational prediction of gene functions
(2006-07-01)Dramatic advances in sequencing technology and sophisticated experimental assays that interrogate the cell, combined with the public availability of the resulting data, herald the era of systems biology. However, the ... -
Performance comparison between k-tuple distance and four model-based distances in phylogenetic tree reconstruction
(2008-03)Phylogenetic tree reconstruction requires construction of a multiple sequence alignment (MSA) from sequences. Computationally, it is difficult to achieve an optimal MSA for many sequences. Moreover, even if an optimal MSA ... -
PIG-the pathogen interaction gateway
(2009-01)Protein-protein interactions (PPIs) play a vital role in initiating infection in a number of pathogens. Identifying which interactions allow a pathogen to infect its host can help us to understand methods of pathogenesis ... -
Momentum, Spring 2019
(Virginia Tech, 2019)This is the Spring 2019 issue of Momentum, the quarterly magazine of the Department of Mechanical Engineering at Virginia Tech. Each issue looks at research, faculty, students, awards and what's going on in the department. -
Mechanical Engineering 2018 Annual Report
(Virginia Tech, 2018)A comprehensive look at the Virginia Tech Department of Mechanical Engineering and its accomplishments in 2018. -
Functional compartmentalization in the hemocoel of insects
(Springer Nature, 2019-04-15)The insect circulatory system contains an open hemocoel, in which the mechanism of hemolymph flow control is ambiguous. As a continuous fluidic structure, this cavity should exhibit pressure changes that propagate quickly. ... -
The Land Development Design Initiative (LDDI) 2015 Annual Report
(Virginia Tech, 2015)The Land Development Design Initiative (LDDI) is a collaborative effort of the Via Department of Civil & Environmental Engineering at Virginia Tech with industry practitioners. This annual report details LDDI's activities ... -
The Land Development Design Initiative (LDDI) 2016 Annual Report
(Virginia Tech, 2016)The Land Development Design Initiative (LDDI) is a collaborative effort of the Via Department of Civil & Environmental Engineering at Virginia Tech with industry practitioners. This annual report details LDDI's activities ... -
The Land Development Design Initiative (LDDI) 2014 Annual Report
(Virginia Tech, 2014)The Land Development Design Initiative (LDDI) is a collaborative effort of the Via Department of Civil & Environmental Engineering at Virginia Tech with industry practitioners. This annual report details LDDI's activities ... -
The Land Development Design Initiative (LDDI) 2013 Annual Report
(Virginia Tech, 2013)The Land Development Design Initiative (LDDI) is a collaborative effort of the Via Department of Civil & Environmental Engineering at Virginia Tech with industry practitioners. This annual report details LDDI's activities ... -
The Land Development Design Initiative (LDDI) 2017 Annual Report
(Virginia Tech, 2017)The Land Development Design Initiative (LDDI) is a collaborative effort of the Via Department of Civil & Environmental Engineering at Virginia Tech with industry practitioners. This annual report details LDDI's activities ... -
The Land Development Design Initiative (LDDI) 2018 Annual Report
(Virginia Tech, 2018)The Land Development Design Initiative (LDDI) is a collaborative effort of the Via Department of Civil & Environmental Engineering at Virginia Tech with industry practitioners. This annual report details LDDI's activities ... -
EBBL (Environmental Biotechnology & Bioenergy Laboratory) 2017 report
(Virginia Tech, 2017)This annual report details the accomplishments of the Environmental Biotechnology & Bioenergy Laboratory (EBBL) in 2017. -
EBBL (Environmental Biotechnology & Bioenergy Laboratory) 2016 report
(Virginia Tech, 2016)This annual report details the accomplishments of the Environmental Biotechnology & Bioenergy Laboratory (EBBL) in 2016. -
EBBL (Environmental Biotechnology & Bioenergy Laboratory) 2018 report
(Virginia Tech, 2018)This annual report details the accomplishments of the Environmental Biotechnology & Bioenergy Laboratory (EBBL) in 2018. -
EBBL (Environmental Biotechnology & Bioenergy Laboratory) 2015 report
(Virginia Tech, 2015)This is the first annual report of the Environmental Biotechnology & Bioenergy Laboratory (EBBL) in the Department of Civil and Environmental Engineering at Virginia Tech. -
Sexy gene conversions: locating gene conversions on the X-chromosome
(2009-08)Gene conversion can have a profound impact on both the short- and long-term evolution of genes and genomes. Here, we examined the gene families that are located on the X-chromosomes of human (Homo sapiens), chimpanzee (Pan ... -
H++3.0: automating pK prediction and the preparation of biomolecular structures for atomistic molecular modeling and simulations
(2012-07)The accuracy of atomistic biomolecular modeling and simulation studies depend on the accuracy of the input structures. Preparing these structures for an atomistic modeling task, such as molecular dynamics (MD) simulation, ...
