A complete theoretical framework for inferring horizontal gene transfers using partial order sets

dc.contributor.author	Belal, Nahla A.	en
dc.contributor.author	Heath, Lenwood S.	en
dc.date.accessioned	2023-10-06T12:49:34Z	en
dc.date.available	2023-10-06T12:49:34Z	en
dc.date.issued	2023-03	en
dc.description.abstract	We present a method for detecting horizontal gene transfer (HGT) using partial orders (posets). The method requires a poset for each species/gene pair, where we have a set of species S, and a set of genes G. Given the posets, the method constructs a phylogenetic tree that is compatible with the set of posets; this is done for each gene. Also, the set of posets can be derived from the tree. The trees constructed for each gene are then compared and tested for contradicting information, where a contradiction suggests HGT.	en
dc.description.version	Published version	en
dc.format.mimetype	application/pdf	en
dc.identifier.doi	https://doi.org/10.1371/journal.pone.0281824	en
dc.identifier.issn	1932-6203	en
dc.identifier.issue	3	en
dc.identifier.pmid	36961781	en
dc.identifier.uri	http://hdl.handle.net/10919/116418	en
dc.identifier.volume	18	en
dc.language.iso	en	en
dc.publisher	Public Library of Science	en
dc.rights	Creative Commons Attribution 4.0 International	en
dc.rights.uri	http://creativecommons.org/licenses/by/4.0/	en
dc.subject	tree	en
dc.subject	reconciliation	en
dc.subject	life	en
dc.title	A complete theoretical framework for inferring horizontal gene transfers using partial order sets	en
dc.title.serial	Plos One	en
dc.type	Article - Refereed	en
dc.type.dcmitype	Text	en

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