The immune epitope database (IEDB) 3.0

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dc.contributor.authorVita, Randien
dc.contributor.authorOverton, James A.en
dc.contributor.authorGreenbaum, Jason A.en
dc.contributor.authorPonomarenko, Juliaen
dc.contributor.authorClark, Jason D.en
dc.contributor.authorCantrell, Jason R.en
dc.contributor.authorWheeler, Daniel K.en
dc.contributor.authorGabbard, Joseph L.en
dc.contributor.authorHix, Deborahen
dc.contributor.authorSette, Alessandroen
dc.contributor.authorPeters, Bjoernen
dc.contributor.departmentIndustrial and Systems Engineeringen
dc.date.accessioned2019-04-12T14:55:18Zen
dc.date.available2019-04-12T14:55:18Zen
dc.date.issued2015-01-28en
dc.description.abstractThe IEDB, www.iedb.org, contains information on immune epitopes-the molecular targets of adaptive immune responses-curated from the published literature and submitted by National Institutes of Health funded epitope discovery efforts. From 2004 to 2012 the IEDB curation of journal articles published since 1960 has caught up to the present day, with > 95% of relevant published literature manually curated amounting to more than 15 000 journal articles and more than 704 000 experiments to date. The revised curation target since 2012 has been to make recent research findings quickly available in the IEDB and thereby ensure that it continues to be an up-to-date resource. Having gathered a comprehensive dataset in the IEDB, a complete redesign of the query and reporting interface has been performed in the IEDB 3.0 release to improve how end users can access this information in an intuitive and biologically accurate manner. We here present this most recent release of the IEDB and describe the user testing procedures as well as the use of external ontologies that have enabled it.en
dc.description.notesNational Institutes of Health [HHSN272201200010C]. Funding for open access charge: National Institutes of Health [HHSN272201200010C].en
dc.description.sponsorshipNational Institutes of Health [HHSN272201200010C]en
dc.format.mimetypeapplication/pdfen
dc.identifier.doihttps://doi.org/10.1093/nar/gku938en
dc.identifier.eissn1362-4962en
dc.identifier.issn0305-1048en
dc.identifier.issueD1en
dc.identifier.pmid25300482en
dc.identifier.urihttp://hdl.handle.net/10919/88950en
dc.identifier.volume43en
dc.language.isoenen
dc.rightsCreative Commons Attribution 4.0 Internationalen
dc.rights.urihttp://creativecommons.org/licenses/by/4.0/en
dc.subjectresourcesen
dc.subjectontologyen
dc.subjectgenbanken
dc.titleThe immune epitope database (IEDB) 3.0en
dc.title.serialNucleic Acids Researchen
dc.typeArticle - Refereeden
dc.type.dcmitypeTexten

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