Tomato Expression Database (TED): a suite of data presentation and analysis tools

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dc.contributor.authorFei, Zhangjunen
dc.contributor.authorTang, Xuemeien
dc.contributor.authorAlba, Roben
dc.contributor.authorGiovannoni, Jamesen
dc.date.accessioned2019-04-23T13:29:24Zen
dc.date.available2019-04-23T13:29:24Zen
dc.date.issued2006-01-01en
dc.description.abstractThe Tomato Expression Database (TED) includes three integrated components. The Tomato Microarray Data Warehouse serves as a central repository for raw gene expression data derived from the public tomato cDNA microarray. In addition to expression data, TED stores experimental design and array information in compliance with the MIAME guidelines and provides web interfaces for researchers to retrieve data for their own analysis and use. The Tomato Microarray Expression Database contains normalized and processed microarray data for ten time points with nine pair-wise comparisons during fruit development and ripening in a normal tomato variety and nearly isogenic single gene mutants impacting fruit development and ripening. Finally, the Tomato Digital Expression Database contains raw and normalized digital expression ( EST abundance) data derived from analysis of the complete public tomato EST collection containing. 150 000 ESTs derived from 27 different non-normalized EST libraries. This last component also includes tools for the comparison of tomato and Arabidopsis digital expression data. A set of query interfaces and analysis, and visualization tools have been developed and incorporated into TED, which aid users in identifying and deciphering biologically important information from our datasets. TED can be accessed at http://ted.bti.cornell.edu.en
dc.format.mimetypeapplication/pdfen
dc.identifier.doihttps://doi.org/10.1093/nar/gkj110en
dc.identifier.eissn1362-4962en
dc.identifier.issn0305-1048en
dc.identifier.pmid16381976en
dc.identifier.urihttp://hdl.handle.net/10919/89093en
dc.identifier.volume34en
dc.language.isoen_USen
dc.rightsCreative Commons Attribution-NonCommercial 2.0 Genericen
dc.rights.urihttp://creativecommons.org/licenses/by-nc/2.0/en
dc.subjectgene-expressionen
dc.subjectmicroarray dataen
dc.subjectfruit-developmenten
dc.subjectgenomicsen
dc.subjectestsen
dc.subjectsolen
dc.titleTomato Expression Database (TED): a suite of data presentation and analysis toolsen
dc.title.serialNucleic Acids Researchen
dc.typeArticle - Refereeden
dc.type.dcmitypeTexten

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