ClaMS: A Classifier for Metagenomic Sequences
| dc.contributor.author | Pati, Amrita | en |
| dc.contributor.author | Heath, Lenwood S. | en |
| dc.contributor.author | Kyrpides, Nikos C. | en |
| dc.contributor.author | Ivanova, Natalia | en |
| dc.contributor.department | Computer Science | en |
| dc.date.accessioned | 2020-07-16T19:25:12Z | en |
| dc.date.available | 2020-07-16T19:25:12Z | en |
| dc.date.issued | 2011 | en |
| dc.description.abstract | ClaMS – “Classifier for Metagenomic Sequences” – is a Java application for binning assembled contigs in metagenomes using user-specified training sets and initial parameters. Since ClaMS trains on sequence composition-based genomic signatures, it is much faster than binning tools that rely on alignments to homologs; ClaMS can bin ~20,000 sequences in 3 minutes on a laptop with a 2.4 GH× Intel Core 2 Duo processor and 2 GB RAM. ClaMS is meant to be a desktop application for biologists and can be run on any machine under any Operating System on which the Java Runtime Environment can be installed. | en |
| dc.description.sponsorship | ClaMS was developed under the auspices of the US Department of Energy Office of Science, Biological and Environmental Research Program and by the University of California, Lawrence Berkeley National Laboratory under contract DE-AC02-05CH11231, Lawrence Livermore National Laboratory under contract DE-AC52-07NA27344 and Los Alamos National Laboratory under contract DE-AC02-06NA25396. | en |
| dc.identifier.doi | https://doi.org/10.4056/sigs.2075298 | en |
| dc.identifier.uri | http://hdl.handle.net/10919/99365 | en |
| dc.identifier.volume | 5 | en |
| dc.language.iso | en_US | en |
| dc.publisher | Springer | en |
| dc.rights | Creative Commons Attribution-ShareAlike 4.0 International | en |
| dc.rights.uri | http://creativecommons.org/licenses/by-sa/4.0/ | en |
| dc.title | ClaMS: A Classifier for Metagenomic Sequences | en |
| dc.title.serial | Standards in Genomic Sciences | en |
| dc.type | Article - Refereed | en |