Scholarly Works, Virginia Agricultural Experiment Station

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VAES faculty are located at 11 Agricultural Research and Extension Centers in Virginia and three colleges at Virginia Tech (CALS, CNRE, and VMRCVM).

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Bacterioses of Soybean
Balaž, Jelica S.; Aćimović, Srđan G. (University of Novi Sad, Serbia, 2008-10-01)
Cultural characteristics of Eutypa lata and one unknown isolate on different nutrient media
Aćimović, Srđan G.; Delibašić, Goran (University of Kragujevac, Serbia, 2005-08)
An Economic Evaluation of Alternative Methods to Manage Fire Blight in Apple Production
Rickard, Bradley J.; Aćimović, Srđan G.; Fazio, Gennaro; Silver, Casey (NYSHS, 2023-04-01)
Our research examined the economic implications of managing fire blight in apple production by using susceptible rootstocks or resistant rootstocks with and without protective sprays. Our results indicate that use Geneva® rootstocks across all incidence levels of fire blight considered gave superior economic outcomes compared to susceptible rootstocks or tree insurance for fire blight.
Effects of Grosmannia clavigera and Leptographium longiclavatum on Western White Pine Seedlings and the Fungicidal Activity of Alamo®, Arbotect®, and TREE-äge®
Wyka, Stephen A.; Doccola, Joseph J.; Strom, Brian L.; Smith, Sheri L.; McPherson, Douglas W.; Aćimović, Srđan G.; Klepzig, Kier D. (International Society of Arboriculture, 2016-03-15)
Bark beetles carry a number of associated organisms that are transferred to the host tree upon attack that are thought to play a role in tree decline. To assess the pathogenicity to western white pine (WWP; Pinus monticola) of fungi carried by the mountain pine beetle (MPB; Dendroctonus ponderosae), and to evaluate the potential for systemic prophylactic treatments for reducing fungal impacts, experiments were conducted with WWP seedlings to meet three objectives: 1) evaluate pathogenicity of two MPB-associated blue-stain fungi; 2) evaluate phytotoxicity of tree injection products; 3) evaluate the anti-fungal activity of tree injection products, in vitro and in vivo, toward the associated blue-staining fungi. To evaluate pathogenicity, seedlings were inoculated with Grosmannia clavigera or Leptographium longiclavatum, common fungal associates of MPB. Seedling mortality at four months after inoculation was 50% with L. longiclavatum and 90% with G. clavigera, both significantly higher than controls and thereby demonstrating pathogenicity. Phytotoxic effects of TREE-äge®, Alamo®, and Arbotect® were evaluated by stem injection; no phytotoxic effects were observed. Anti-fungal properties of the same three products were evaluated in vitro against G. clavigera, where Alamo was most active. Co-inoculation of G. clavigera and L. longiclavatum into seedlings after a stem injection of Alamo showed significantly less mortality and lesion formation than either species alone. Results support the hypothesis that MPB blue-stain associates, particularly G. clavigera, promote death of WWP when attacked by MPB. These findings suggest that the administration of a fungicide with insecticide for tree protection against bark beetles may be advantageous.
Erwinia amylovora in Vojvodina and Measures of Control
Balaž, Jelica S.; Keserović, Zoran; Aćimović, Srđan G.; Nikolic, Zorica; Mažić, Jelena (University of Novi Sad, Serbia, 2009-02-10)
Eutypa Dieback and ESCA - Trunk Necrosis and Dieback Diseases of Grapevines in Serbia
Aćimović, Srđan G.; Delibašić, Goran; Schilder, Annemiek; Tanovic, Brankica (University of Novi Sad, Serbia, 2008-12-22)
Evaluation of Giant Knotweed Extract, Regalia, and Antibiotics in Control of Shoot Blight and Fire Blight Canker Phases on Apple
Boeckman, Nathanial; Borba, Matheus Correa; Aćimović, Srđan G. (MDPI, 2024-09-26)
We evaluated the effectiveness of three different treatment groups at managing apple shoot blight, and the resulting canker incidence and canker length on wood caused by Erwinia amylovora. Preventative foliar sprays or trunk injections of giant knotweed extract (Regalia), oxytetracycline (Arbor-OTC or FireLine + Regulaid), or streptomycin (Agri-mycin/FireWall + Regulaid) were applied to mature ‘Fuji’ trees. Regalia and oxytetracycline were ineffective at reducing shoot blight severity, showing poor disease reductions of 18.2% and 24.3% compared to untreated controls across both years. Streptomycin was effective at controlling shoot blight severity when applied as a spray application, reducing necrosis by up to 93.9% across both years. Canker incidence was also poorly reduced by Regalia and oxytetracycline with an average decrease of 33.3% and 52.4%, respectively. Again, spray applications of streptomycin were most effective at reducing canker incidence (95.2%). When present, canker length was best controlled by spray applications of streptomycin, showing an average reduction of 95.7%. The effectiveness of Regalia and oxytetracycline was poor, reducing canker length by only 30.4% and 43.5%, respectively. Trunk injections of Regalia were consistently less effective than spray applications. Compared to their spray application counterpart, Regalia injections were, on average, 12.5%, 26.3%, and 25.1% less effective at reducing shoot blight severity, canker incidence, and canker length, respectively. Injected Arbor-OTC was more effective than spray applications of oxytetracycline. On average, Arbor-OTC injections were up to 28.3%, 40.1%, and 30% more effective at reducing shoot blight severity, canker incidence, and canker length compared to spray applications. Overall, Regalia and oxytetracycline were not as effective as streptomycin at controlling fire blight. The search for organic antibiotic alternatives for shoot blight and canker control continues, as cankers are increasing in economic importance by causing bearing wood and young tree death.
Evaluation of Trunk-injected Bactericides and Prohexadione-calcium for Environmentally Friendly Control of Fire Blight (Erwinia amylovora) in Apples
Aćimović, Srđan G.; McGhee, Gayle C.; Sundin, George W.; Wise, John C. (Plant Protection Society of Serbia (PPSS), 2015-11-18)
Trunk injection is a novel delivery method for plant protective compounds in agriculture. It could increase sustainability of fruit production through target-precise disease control. We evaluated trunk-injected antibiotics, copper chelate (CC), and prohexadione-calcium (PC) in control of fire blight on apples. After 1-2 spring injections of oxytetracycline (OX), kasugamycin (KS) and CC, we evaluated inoculated apple trees for blossom and shoot blight incidence. In a separate study, after spraying or injection of PC, we evaluated shoot blight severity after inoculation. At a high disease pressure, OX, KS and CC provided blossom blight control of 60.6, 31.7 and 15.5-17.8%, respectively. The same compounds provided control of shoot blight incidence of 60.7, 42 and 24.5-33.9%, respectively. The results indicate that shoots initially accumulate more of the injected compound than flowers, due to their higher transpiration driven by larger green tissue area. Sprayed PC reduced shoot blight severity for 25.6% and caused expected reduction of shoot length, while trunk-injected PC failed to cause any of these effects. This indicates that PC did not translocate into the canopy due to its strong binding in the xylem. With the development and use of injectable formulations, proper dosing, and optimal injection timing, delivered compounds could have more time for accumulation in the canopy and thus provide better fire blight control. Hence, trunk injection could become an effective option for fire blight control on apple trees.
Fire blight resistance, irrigation and conducive wet weather improve Erwinia amylovora winter survival in cankers
Santander, Ricardo D.; Khodadadi, Fatemeh; Meredith, Christopher L.; Radenovic, Zeljko; Clements, Jon; Aćimović, Srđan G. (Frontiers, 2022-10)
Erwinia amylovora causes fire blight, a disease responsible for enormous economic losses in the pome fruit-producing areas where it is present. Despite the abundant research on fire blight, information about E. amylovora population dynamics and survival in fire blight cankers and the plant defense responses to this pathogen in the infected bark are limited. In our study, we obtained fire blight cankers in apple, pear, and Asian pear cultivars showing differing resistance to the disease by shoot inoculation with E. amylovora. We collected cankers from irrigated and non-irrigated trees every 3 months in two independent field experiments and analyzed samples by viability digital PCR. We also assessed the expression of pathogenicity-related (PR) genes in the bark of selected apple and Asian pear cultivars. A logistic regression analysis revealed the impact of environmental and host factors on E. amylovora detection rates in cankers. The chances of detecting live E. amylovora cells in cankers increased significantly in those collected from irrigated trees, in July, and/or during an experiment performed in a year with an expected average rainfall when compared to samples from non-irrigated trees, collected in January, and/or during an experiment performed under environmental conditions dominated by drought. We found a positive correlation between the pathogen detection rates in cankers and the host resistance to fire blight that might be explained by lower E. amylovora survival rates in more damaged tissues of susceptible hosts. The genes PR-1, PR-2, PR-5, and PR-8 were induced in the bark surrounding apple and Asian pear fire blight cankers. Our study, involving the analysis of more than 800 canker samples, provides new knowledge about the fire blight disease cycle and lays the foundation for improved fire blight management and eradication strategies in pome fruit orchards.
Fire blight rootstock infections causing apple tree death: a case study in high-density apple orchards with Erwinia amylovora strain characterization
Aćimović, Srđan G.; Santander, Ricardo Delgado; Meredith, Christopher L.; Pavlovic, Zaklina M. (Frontiers, 2023-03-13)
A devastating outcome of fire blight in apple trees is the infection of rootstock, which leads to canker development. Fire blight cankers are infected zones of dead bark on perennial branches, trunk, or rootstock that develop after fire blight pathogen Erwinia amylovora invades wood. Cankers can girdle the trunk, branches and rootstock leading to tree death and production losses, especially significant in high-density orchards. An accurate diagnosis of trunk and rootstock blight is a top challenge for apple growers because fire blight cankers can be visually misdiagnosed with cankers caused by less frequent Oomycete and fungal pathogens (e.g., Phytophthora spp., Botryosphaeria dothidea, B. obtusa, Valsa mali). In addition, detecting E. amylovora in apple rootstocks is essential because this pathogen also causes asymptomatic infections. Accurate fire blight diagnosis is necessary to inform the complete removal of infected trees from the orchard and help replanting efforts while preventing further pathogen dissemination. To determine apple tree losses caused by fire blight rootstock infections, PCR was used to detect E. amylovora in symptomatic and asymptomatic rootstocks for two years. Rootstock canker incidence and tree death were rated in selected infection foci on seven commercial apple orchards in New York. Each infection focus consisted of central rootstock-blighted tree and the nearest surrounding edge trees showing no rootstock blight. E. amylovora strains collected from these seven orchards and other orchards in New York were characterized. In the first year, most of the orchards showed E. amylovora detection rates of 10.7 – 45.3% in asymptomatic rootstocks on the edge trees immediately surrounding visibly infected i.e. rootstock-blighted central trees. One year later, 20.8 – 56.3% cankered rootstocks were detected on the edge trees and from zero to 35.4% dead edge trees were recorded. However, the PCR from sampled edge rootstocks one year later showed no pathogen detections. E. amylovora rootstock strains showed slight variability in enzymatic activity, copper sensitivity, virulence, and exopolysaccharide production. These results elucidate the role and importance of rootstock infections for apple tree survival, the presence of latent fire blight infections, and the valuable utility of molecular detection methods to assist apple tree removal after epidemics.
Genomic Resources of Four Colletotrichum Species (C. fioriniae, C. chrysophilum, C. noveboracense, and C. nupharicola) Threatening Commercial Apple Production in the Eastern United States
Khodadadi, Fatemeh; Giroux, Emily; Bilodeau, Guillaume J.; Jurick, Wayne M. II; Aćimović, Srđan G. (American Phytopathological Society, 2023-03-07)
The genus Colletotrichum includes nine major clades with 252 species and 15 major phylogenetic lineages, also known as species complexes. Colletotrichum spp. are one of the top fungal plant pathogens causing anthracnose and pre- and postharvest fruit rots worldwide. Apple orchards are imperiled by devastating losses from apple bitter rot, ranging from 24 to 98%, which is a serious disease caused by several Colletotrichum species. Bitter rot is also a major postharvest rot disease, with C. fioriniae causing from 2 to 14% of unmarketable fruit in commercial apple storages. Dominant species causing apple bitter rot in the Mid- Atlantic United States are C. fioriniae from the Colletotrichum acutatum species complex and C. chrysophilum and C. noveboracense from the C. gloeosporioides species complex (CGSC). C. fioriniae is the dominant species causing apple bitter rot in the Northeastern and Mid-Atlantic states. C. chrysophilum was first identified on banana and cashew but has been recently found as the second most dominant species causing apple bitter rot in the Mid-Atlantic. As the third most dominant pathogen, C. noveboracense MB 836581 was identified as a novel species in the CGSC, causing apple bitter rot in the Mid-Atlantic. C. nupharicola is a sister group to C. fructicola and C. noveboracense, also causing bitter rot on apple. We deliver the resources of 10 new genomes, including two isolates of C. fioriniae, three isolates of C. chrysophilum, three isolates of C. noveboracense, and two isolates of C. nupharicola collected from apple fruit, yellow waterlily, and Juglans nigra.
Improved Canker Processing and Viability Droplet Digital PCR Allow Detection of Erwinia amylovora Viable Nonculturable Cells in Apple Bark
Dhar, Bidhan Chandra; Delgado Santander, Ricardo; Aćimović, Srđan G. (MDPI, 2024-02-12)
The bacterium Erwinia amylovora causes fire blight and continues to threaten global commercial apple and pear production. Conventional microbiology techniques cannot accurately determine the presence of live pathogen cells in fire blight cankers. Several factors may prevent E. amylovora from growing on solid culture media, including competing microbiota and the release of bacterial-growth-inhibitory compounds by plant material during sample processing. We previously developed a canker processing methodology and a chip-based viability digital PCR (v-dPCR) assay using propidium monoazide (PMA) to bypass these obstacles. However, sample analysis was still time-consuming and physically demanding. In this work, we improved the previous protocol using an automatic tissue homogenizer and transferred the chip-based v-dPCR to the BioRad QX200 droplet dPCR (ddPCR) platform. The improved sample processing method allowed the simultaneous, fast, and effortless processing of up to six samples. Moreover, the transferred v-ddPCR protocol was compatible with the same PMA treatment and showed a similar dynamic range, from 7.2 × 10² to 7.6 × 10⁷ cells mL⁻¹, as the previous v-dPCR. Finally, the improved protocol allowed, for the first time, the detection of E. amylovora viable but nonculturable (VBNC) cells in cankers and bark tissues surrounding cankers. Our v-ddPCR assay will enable new ways to evaluate resistant pome fruit tree germplasm, further dissect the E. amylovora life cycle, and elucidate E. amylovora physiology, epidemiology, and new options for canker management.
Lasiodiplodia iraniensis and Diaporthe spp. Are Associated with Twig Dieback and Fruit Stem-End Rot of Sweet Orange, Citrus sinensis, in Florida
Piattino, Valeria; Aiello, Dalia; Dardani, Greta; Martino, Ilaria; Flores, Mauricio; Aćimović, Srđan G.; Spadaro, Davide; Polizzi, Giancarlo; Guarnaccia, Vladimiro (MDPI, 2024-04-17)
Florida ranks among the most important citrus growing regions in the USA. The present study investigates the occurrence, diversity, and pathogenicity of fungal species associated with symptomatic sweet orange (Citrus sinensis) cv. Valencia plants and fruit. The survey was conducted on twigs and fruit collected in Southwest Florida during 2022. Based on morphological and molecular characteristics, the identified isolates belonged to the species Lasiodiplodia iraniensis, Diaporthe pseudomangiferae, and Diaporthe ueckerae. The pathogenicity of representative isolates was evaluated on citrus fruit and plants. Lasiodiplodia iraniensis was the most virulent on fruit and plants, followed by Diaporthe pseudomangiferae. Diaporthe ueckerae had the lowest virulence on fruit, and it was not pathogenic to plants. In vitro tests were performed to assess the effect of temperature on mycelial radial growth. The optimum temperature of growth ranged from 26.0 to 28.4 °C for all the evaluated species, and L. iraniensis showed the fastest mycelial growth. This study represents the first report of L. iraniensis as a causal agent of tree dieback and fruit stem-end rot on C. sinensis worldwide. Moreover, D. pseudomangiferae and D. ueckerae are reported here for the first time in association with citrus diseases worldwide.
Multiplexed SSR marker analysis of Diplocarpon coronariae reveals clonality within samples from Middle Europe and genetic distance from Asian and North American isolates
Oberhänsli, Thomas; Dalbosco, Anna; Leschenne, Virginie; Bohr, Anne; Buchleither, Sascha; Tamm, Lucius; Wille, Lukas; Aćimović, Srđan G.; Khodadadi, Fatemeh; Ryu, Young-Hyun; Studer, Bruno; Schärer, Hans-Jakob; Patocchi, Andrea (2021-05-29)
Background Apple blotch (AB) caused by Diplocarpon coronariae (Dc) has been established in Europe since 2010. AB is a serious apple disease, mostly in low input orchards and in cider production areas in Northern Italy, Switzerland, Austria and Germany. However, the epidemiology and population genetic structure of this pathogen is unknown. Methods We developed twelve Dc-specific microsatellite markers and screened DNA of both pure fungal isolates and infected apple leaves. The marker data of 313 European samples of Dc were compared to Dc isolates from Asia (n = 7) and the USA (n = 3). Results We found 31 distinct multilocus genotypes (MLGs) in European samples, and seven additional MLGs in the Asian and USA samples. The European samples had the typical genetic signature of a recently introduced species including high clonality, a low number of private alleles and one dominant MLG across all the sampling sites. All European MLGs were genetically distant from those MLGs of Asian and USA origin. Based on the lack of linkage disequilibrium observed, there is evidence that Dc undergoes regular cycles of sexual recombination in the European population, although the sexual stage (apothecia) has not been observed in Europe. Conclusions The twelve newly developed SSR markers reported here provide a useful tool to characterize the population genetic diversity and structure of Dc in Europe. Our study supports the hypothesis that Dc is a recently introduced pathogen in Europe, but of currently unknown origin. Dc has a large effective population size during field epidemics, so we believe that the pathogen has substantial evolutionary potential. Application of the SSR markers to large-scale and diverse Dc samples will help to better understand the epidemiology of AB, which has become a global apple disease, and will help guide effective mitigation strategies based on disease management and resistance breeding.
New Species-Specific Real-Time PCR Assays for Colletotrichum Species Causing Bitter Rot of Apple
McHenry, Diana J.; Aćimović, Srđan G. (MDPI, 2024-04-27)
Bitter rot of apple is an economically important worldwide disease caused by different Colletotrichum species, depending on many factors such as climate, geography, other hosts, and crop management practices. Culture, morphology, and single-locus sequencing-based methods for identifying the Colletotrichum species are severely limited in effectiveness, while the multilocus sequence typing methods available for delineating species are costly, time-intensive, and require high expertise. We developed species-specific hydrolysis probe real-time PCR assays for the following nine Colletotrichum species causing bitter rot in the Mid-Atlantic U.S.A.: C. fructicola, C. chrysophilum, C. noveboracense, C. gloeosporioides s.s., C. henanense, C. siamense and C. theobromicola from the C. gloeosporioides species complex, and C. fioriniae and C. nymphaeae from the C. acutatum species complex. After searching 14 gene regions, we designed primers and probes in 5 of them for the nine target species. Four primer–probe set pairs were able to be duplexed. Sensitivity tests showed as little as 0.5 pg DNA were detectable. These real-time PCR assays will provide rapid and reliable identification of these key Colletotrichum species and will be critically important for studies aiming to elucidate their biology, epidemiology, and management on apples as the number one produced and consumed tree fruit in the U.S.A.
PATHMAP (Pathogen And Tree fruit Health MAP): A Smartphone App and Interactive Dashboard to Record and Map Tree Fruit Diseases, Disorders, and Insect Pests
Jurick, Wayne M.; Messinger, Lindsey; Wallis, Anna; Peter, Kari A.; Villani, Sara; Bradshaw, Michael J.; Bartholomew, Holly P.; Buser, Michael; Aćimović, Srđan G.; Fonseca, Jorge M.; Cox, Kerik D. (Scientific Societies, 2022-12)
PATHMAP (Pathogen And Tree fruit Health MAP) is a smartphone application (app) and interactive dashboard developed specifically for support specialists, extension personnel, and university scientists supporting the tree fruit industry. The PATHMAP app collects detailed information about observed diseases, insect pests, and disorders and provides the option to attach photos. The data are then visualized using a graphical interface dashboard displaying an interactive color-coded map. Prior to the development of PATHMAP, abundant tree fruit disorder data were collected each year, but a central interactive repository for archiving data and facilitating communication of field observations did not exist. PATHMAP has been beta tested by university extension personnel, private consultants, and university scientists to ensure usability and functionality. PATHMAP will be used within the tree fruit industry for monitoring known pest patterns, occurrences, and outbreaks of emerging pathogens. It will augment existing extension diagnosis listservs that have value in visual diagnosis but are cumbersome and have no archiving capabilities. Data obtained through the tool can be used in epidemiological meta-analyses and to develop new predictive models, and can serve as a platform to track emerging pathogens, insects, and disorders for a variety of cropping systems. [Formula: see text] The author(s) have dedicated the work to the public domain under the Creative Commons CC0 “No Rights Reserved” license by waiving all of his or her rights to the work worldwide under copyright law, including all related and neighboring rights, to the extent allowed by law, 2022.
Proof of concept for management of shoot blight and fire blight cankers on pear with preventive spray applications of giant knotweed extract
Borba, Matheus C.; Meredith, Christopher L.; Dhar, Bidhan C.; Aćimović, Srđan G. (Frontiers, 2023-03-16)
With the goal to develop management tools to mitigate the severity of shoot blight on pear caused by Erwinia amylovora and prevent fire blight canker development from infected shoots on pear tree wood, we evaluated five preventive treatments in inoculated experiments over 2-years. We focused on foliar spray and trunk injection applications of extract of giant knotweed, Reynoutria sachalinensis (RSE), as a plant resistance activator candidate and on comparisons to antibiotics. Five foliar applications of RSE (2.24 L/ha) on 6-year-old trees of cultivar ‘Bartlett’ resulted in 100% control of shoot blight severity and canker incidence in both years of evaluation. The RSE trunk injection in fall of the first year did not control the disease allowing 75% of shoot severity and 38.5% of canker incidence. The opposite happened in the second year, when we injected RSE in spring, providing 85.7% control of shoot blight severity and 89.8% control of canker incidence. Antibiotics oxytetracycline (OTC) and streptomycin (STM) did not provide consistent control in the second year in comparison to the first year. In the first year, both antibiotics, OTC (trunk injection and foliar spray) and STM were effective, providing 94.8%, 100% and 86.3% control of shoot blight, respectively. They also provided 100, 91 and 84% control of canker incidence, respectively. However, in the second they were not effective allowing 69 – 96% of shoot blight severity and 70 – 92% of canker incidence. Regardless of the inconsistency in the effectiveness of antibiotics, which are not recommended for shoot blight control due to risks of promoting antibiotic resistance, five preventive spray applications of RSE could be used on pear trees to prevent shoot blight and canker development. Thus, the RSE spray program we developed could serve as a valuable control tool that could help prevent sudden outbreaks of shoot blight during summer and pear tree death from fire blight cankers with no risk for pathogen resistance.
Proof of Concept for Shoot Blight and Fire Blight Canker Management with Postinfection Spray Applications of Prohexadione-Calcium and Acibenzolar-S-Methyl in Apple
Aćimović, Srđan G.; Meredith, Christopher L.; Santander, Ricardo Delgado; Khodadadi, Fatemeh (Scientific Societies, 2021-12-03)
To reduce the severity of shoot blight and prevent the resulting development of cankers on perennial apple wood, we evaluated eight fire blight postinfection spray programs of prohexadione-calcium (PCA) alone or with acibenzolar-S-methyl (ASM) over 2 years. On mature trees of cultivar Royal Court, a single application of the high PCA rate (247 mg/liter) at 2 to 3 days after inoculation resulted in 89.5 and 69.5% reduction of shoot blight severity after inoculation. Two applications of PCA 247 mg/liter 12 or 14 days apart, with the first one applied 2 to 3 days after inoculation, resulted in 78.8 and 74.5% reduction of shoot blight severity in both years. A 100% control of canker incidence on perennial wood from infected shoots in both years was achieved with a single application of PCA (247 mg/liter) applied at 2 or 3 days after the inoculation, and three applications of PCA (125 mg/liter) + ASM (25 mg/liter) 12 to 16 days apart reduced canker incidence by 83.5 and 69% in the 2 years. The other programs with lower PCA rates and frequencies of application reduced shoot blight severity 50.8 and 51.8% (PCA) and 62.6 to 72% and 59.3% (PCA + ASM) over 2 years, respectively. Reduction of canker incidence on wood by the other programs was 66.5% and 69 to 90.4% in the two years, respectively. As fire blight cankers lead to death of dwarf apple trees and serve as primary sources of inoculum, our effective PCA and PCA + ASM programs could serve as viable postinfection management options. These treatments can reduce or prevent canker development and thus significantly abate tree losses in high-density apple orchards after fire blight epidemics occur.
Some important fungal pathogens of medicinal plants in Južna-Bačka region
Balaž, Jelica S.; Aćimović, Srđan G.; Crnobarac, Jovan; Adamović, Dušan; Jacimovic, Goran (University of Novi Sad, Serbia, 2010-01-01)
Unveiling the Arsenal of Apple Bitter Rot Fungi: Comparative Genomics Identifies Candidate Effectors, CAZymes, and Biosynthetic Gene Clusters in Colletotrichum Species
Khodadadi, Fatemeh; Luciano-Rosario, Dianiris; Gottschalk, Christopher; Jurick, Wayne M.; Aćimović, Srđan G. (MDPI, 2024-07-16)
The bitter rot of apple is caused by Colletotrichum spp. and is a serious pre-harvest disease that can manifest in postharvest losses on harvested fruit. In this study, we obtained genome sequences from four different species, C. chrysophilum, C. noveboracense, C. nupharicola, and C. fioriniae, that infect apple and cause diseases on other fruits, vegetables, and flowers. Our genomic data were obtained from isolates/species that have not yet been sequenced and represent geographic-specific regions. Genome sequencing allowed for the construction of phylogenetic trees, which corroborated the overall concordance observed in prior MLST studies. Bioinformatic pipelines were used to discover CAZyme, effector, and secondary metabolic (SM) gene clusters in all nine Colletotrichum isolates. We found redundancy and a high level of similarity across species regarding CAZyme classes and predicted cytoplastic and apoplastic effectors. SM gene clusters displayed the most diversity in type and the most common cluster was one that encodes genes involved in the production of alternapyrone. Our study provides a solid platform to identify targets for functional studies that underpin pathogenicity, virulence, and/or quiescence that can be targeted for the development of new control strategies. With these new genomics resources, exploration via omics-based technologies using these isolates will help ascertain the biological underpinnings of their widespread success and observed geographic dominance in specific areas throughout the country.

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