VTechWorks Repository :: Browsing by Author "Frimpong, Emmanuel A."

Browsing by Author "Frimpong, Emmanuel A."

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Abundance Trends and Drivers of Change in Freshwater Fish Communities of the New River Basin
Sleezer, Logan J. (Virginia Tech, 2020-06-25)
Habitat destruction/alteration and non-native species are widely considered the two most serious threats to biodiversity within freshwater ecosystems, which are among the most threatened in the world. I examined the effects of these factors, specifically focusing on land use and non-native species as drivers of abundance patterns of native fishes in the highly invaded and anthropogenically impacted New River basin (NRB) in the Appalachian region of the United States. In chapter 2, I examine current native and non-native species abundance patterns related to the highly variable land-use mosaic present across the NRB, with specific focus on the species-specific effects of intensive land-use practices (agriculture and urbanization) at varying spatial extents (upstream watershed, upstream riparian, and local riparian). In chapter 3, I investigate historical context of basin-wide and site-level abundance spread and decline of natives and non-natives in the upper and middle New River basin (UMNR) over the past 60+ years. Finally, in chapter 4, I partition the variation in native species abundance explained separately by land use and non-native species to determine which factor might be most influential in describing abundance distributions of UMNR native fishes over the past 20+ years. My results indicate widely varying responses of native species to various combinations of intensive land use and non-native species across contributing watersheds and widespread biotic homogenization and native species declines over the past 60+ years. These declines include reductions in unique communities and endemic species provided little consideration or protection under current conservation law. I suggest potential avenues for improvement of conservation actions to help preserve these unique species and communities based on their responses to various land-use and non-native species stressors. My study framework should be broadly applicable to other drainages and should provide opportunities for early identification of potential native species declines and the stressors that may be contributing to them.
Applying ecological models to positive interactions among lotic fishes: implications for population and community regulation at multiple spatial scales
Peoples, Brandon Kevin (Virginia Tech, 2015-05-06)
Positive biotic interactions such as mutualism, commensalism and facilitation are ubiquitous in nature, but historically have received considerably less research attention than negative interactions such as competition, predation and parasitism. The paucity of research on positive interactions is particularly evident in stream ecosystems and in vertebrate communities. Stream fishes clearly provide an ideal system for advancing research on positive interactions. Many minnows (Cyprinidae) of eastern North America engage in a potentially mutualistic reproductive interaction known as nest association, in which individuals of one species (nest associates) spawn in nests constructed by host species. In nest association, hosts provide unsilted gravel substrate for spawning nest associates, and increased parental care to associate broods. High associate: host egg ratios can create a dilution effect, reducing the probability that host eggs will be preyed upon by egg predators. Nest associative interactions are common, but are relatively understudied compared to other interactions among stream fishes. The goals of this study were to apply general ecological models to this novel system to (a) gain new insight into the mechanisms structuring nest associative stream fish communities, and (b) to use inference from stream fish communities to potentially expand and improve the general ecological models. These goals required completion of three objectives, including (1) examining the influence of abiotic and biotic contexts on reproductive behavior and fitness outcomes between a cyprinid host and associate, using the biological markets model to generate predictions; (2) examining the utility of the nest web framework (previously only used for cavity nesting vertebrate communities) and the stress gradient hypothesis (previously applied almost exclusively to plant communities) for predicting which associate species spawn on nests built by various nest building species, and the consequences of these choices, respectively; and (3) using two-species occupancy modeling to determine the relative influence of biotic interactions and habitat covariates on the co-occurrence of a host and two nest associates. To accomplish these goals, I conducted a large-scale experiment to manipulate presence of mutualists (Nocomis leptocephalus, host; Chrosomus oreas, associate), egg predators (biotic context) and habitat quality (abiotic context). I conducted behavioral nest observations and conducted repeated stream fish stream fish community surveys to collect demographic data. I constructed a nest web from observational data, and implemented structural equation modeling through an information-theoretic framework to identify nest web plausibility across a large spatial extent. I tested some predictions of the stress gradient hypothesis by regressing juveniles-per-nest and a metric of cyprinid community structure on a composite measure of physical stress (scaled gradients of catchment-scale agricultural land use and catchment area). I used two-species occupancy modeling to model co-occurrence of N. leptocephalus hosts and two associates, C. oreas and Clinostomus funduloides, and used an information-theoretic framework to compare hypotheses representing the importance of biotic interactions, habitat covariates or both at determining species co-occurrence. Results corroborated some (but not all) model predictions, and identified room for improvement in each of the general models. Nest associative spawning by C. oreas was not context dependent; C. oreas did not spawn in the absence of a reproductively active male N. leptocephalus at any treatment level. However, the net fitness outcome of host and associate species was mutualistic, and the interaction outcome switched from commensalistic to mutualistic with abiotic context. N. leptocephalus reproductive success was improved by C. oreas presence in less-silted habitats, but not in heavily-silted habitats. This is most likely because broods were subject to predation in both habitat types, but were also negatively affected by siltation in silted habitats. Accordingly, egg dilution by associates was not sufficient to support a mutualistic relationship in less favorable habitats. Results suggest that the biological markets model may be a useful tool for predicting fitness outcomes of nest associative mutualism, but may not be as useful for predicting the behavioral outcomes of obligate mutualisms. Future applications of the biological markets model should carefully consider species traits, specifically the degree to which trading behavior is obligate for participants. Future work with this model will yield more insight by considering highly facultative associates. Nest webs constructed from nest observational data suggested an interaction topology in which strong (nearly-obligate) associates relied most frequently on N. leptocephalus nests, and less frequently on nests constructed by Campostoma anomalum. Weak (facultative) associates were seldom associated with nests constructed by either species, and probably spawned before hosts began nesting activity. Structural equation models corroborated this topology throughout the New River basin, although some less-supported model evidence specified some nest association by weak associates. Juveniles-per-nest of strong associates responded positively to physical stress, while this metric for other cyprinid reproductive groups showed no relationship. Proportional representation of Nocomis and strong associates also increased predictably with physical stress. This study suggests that the nest web framework can be informative to systems outside the ones for which it was developed; future studies may be able to use this framework to better understand the role of habitat-modifying species in communities other than cavity nesting terrestrial vertebrates and nest associative stream fishes. This work extended the nest web framework by (a) modeling the outcomes of interactions instead of the interactions themselves, and (b) by using structural equation modeling to test nest web predictions with an information-theoretic framework. This study also suggests that the stress gradient hypothesis can be useful for understanding interaction dynamics in vertebrate communities; this represents the first direct evidence that this model can be used in vertebrate communities. Further, I demonstrate that the stress gradient hypothesis may be extended to predict community structure. However, more research in a diversity of systems will be needed to determine the extent to which this can be applied. This study provides some of the first evidence of large-scale positive co-occurrence patterns in vertebrates. However, the precise roles of habitat covariates and biotic interactions were species-specific. Occupancy results suggest that co-occurrence between N. leptocephalus and nest associate C. funduloides is driven only by reproductive behavioral interactions. Alternatively, evidence suggests that co-occurrence between N. leptocephalus and C. oreas is driven by both nest association and habitat covariates. That two-species occupancy modeling can be a useful tool for comparing difficult-to-test hypotheses involving biotic interactions at large spatial scales. This study represents the first quantitative, multi-scale treatment of positive interactions in stream ecosystems. This study demonstrates that applying general ecological models to stream fish communities can yield new insights about both the study system and the models themselves. While models of negative interactions, food webs and dispersal have been applied to stream fishes, we stand to gain much ground by also considering positive biotic interactions. In doing so, stream fish ecologists will also be able to contribute to the advancement of general ecology, and thus raise awareness for these understudied ecosystems and taxa.
An approach to assess data-less small-scale fisheries: examples from Congo rivers
Castello, Leandro; Carvalho, Felipe; Ateba, Nelly Ornelle Onana; Busanga, Alidor Kankonda; Ickowitz, Amy; Frimpong, Emmanuel A. (Springer, 2023-03)
Small-scale fisheries (SSF) account for much of the global fish catch, but data to assess them often do not exist, impeding assessments of their historical dynamics and status. Here, we propose an approach to assess 'data-less' SSF using local knowledge to produce data, life history theory to describe their historical multispecies dynamics, and length-based reference points to evaluate stock status. We demonstrate use of this approach in three data-less SSFs of the Congo Basin. Fishers' recalls of past fishing events indicated fish catch declined by 65-80% over the last half-century. Declines in and depletion of many historically important species reduced the diversity of exploited species, making the species composition of the catch more homogenous in recent years. Length-at-catch of 11 of the 12 most important species were below their respective lengths-at-maturity and optimal lengths (obtained from Fishbase) in recent years, indicating overfishing. The most overfished species were large-bodied and found in the Congo mainstem. These results show the approach can suitably assess data-less SSF. Fishers' knowledge produced data at a fraction of the cost and effort of collecting fisheries landings data. Historical and current data on fish catch, length-at-catch, and species diversity can inform management and restoration efforts to curb shifting baselines of these fisheries. Classification of stock status allows prioritizing management efforts. The approach is easy to apply and generates intuitive results, having potential to complement the toolkits of researchers and managers working in SSF and engage stakeholders in decision-making processes.
Aquaculture-Mediated Invasion of the Genetically Improved Farmed Tilapia (Gift) into the Lower Volta Basin of Ghana
Anane-Taabeah, Gifty; Frimpong, Emmanuel A.; Hallerman, Eric M. (MDPI, 2019-10-02)
The need for improved aquaculture productivity has led to widespread pressure to introduce the Genetically Improved Farmed Tilapia (GIFT) strains of Nile tilapia (Oreochromis niloticus) into Africa. However, the physical and regulatory infrastructures for preventing the escape of farmed stocks into wild populations and ecosystems are generally lacking. This study characterized the genetic background of O. niloticus being farmed in Ghana and assessed the genetic effects of aquaculture on wild populations. We characterized O. niloticus collected in 2017 using mitochondrial and microsatellite DNA markers from 140 farmed individuals sampled from five major aquaculture facilities on the Volta Lake, and from 72 individuals sampled from the wild in the Lower Volta River downstream of the lake and the Black Volta tributary upstream of the lake. Our results revealed that two farms were culturing non-native O. niloticus stocks, which were distinct from the native Akosombo strain. The non-native tilapia stocks were identical to several GIFT strains, some of which showed introgression of mitochondrial DNA from non-native Oreochromis mossambicus. We also found that the non-native cultured tilapias have escaped into the wild and interbred with local populations, and also observed potentially admixed individuals on some farms. Our results highlight aquaculture as a vector in the spread of invasive non-native species and strains, and underscore the importance of genetic baseline studies to guide conservation planning for wild populations.
Assessing Changes in Bog Turtle (Glyptemys muhlenbergii) Population Abundance and Factors Influencing Nest Predation in Virginia
Holden, Michael Thomas (Virginia Tech, 2021-06-10)
Across the globe, wildlife populations are facing increasing challenges, with many taxonomic groups significantly declining. Among endangered vertebrates (including birds, non-avian reptiles, fishes, mammals, and amphibians), turtles are one of the most threatened groups with over 60% of the 356 recognized species classified as threatened or worse. Bog turtles (Glyptemys muhlenbergii), are among the most imperiled of North American freshwater turtles. These small, secretive turtles have declined by up to 90% in parts of their range, which consists of the Northern Population and the Southern Population, and spans the eastern U.S. from New York to Georgia. These declines are mainly documented in the northern part of their range, but recent work in North Carolina suggests that turtles in the southern part of their range are similarly declining. Prior to this research, surveys aimed at estimating abundance had not been conducted in Virginia since the late 1990's. The research described here was conducted as part of a state-wide population assessment of bog turtles in Virginia. For my first chapter, I conducted capture-mark-recapture surveys in six wetlands in Floyd County, Virginia during 2019 and 2020, and generated abundance estimates. These wetlands had been surveyed in the same manner in 1997, which provided me the opportunity to compare recent abundance estimates with those generated from the 1997 data. My analyses suggest that turtle abundance across these six sites has declined by approximately 50% since 1997. This decline appears to be driven by, but not wholly attributable to, the alteration and loss of habitat at 2-3 of the 6 sites. Habitat loss is acknowledged as one of the major drivers of population declines throughout the range of the bog turtle, in addition to illegal collection for the international pet trade. Due to the life history traits of this species (long life span and low fecundity), the loss of an individual from any life stage from the population can have detrimental effects. While many turtle populations are not heavily impacted from periods of low reproductive success, numerous subsequent years of complete nesting failure can negatively impact population-level survival. Recent studies have suggested that anthropogenically subsidized nest predators may be playing a role in continued nest failure at certain wetlands. My second chapter investigated the factors associated with anthropogenic footprint (i.e., buildings) and infrastructure that may be driving nest predation by these subsidized predators. In 2019 and 2020, I conducted a field experiment in 35 wetlands which utilized artificial turtle nests to investigate variation in nest predation across Montgomery and Floyd Counties, Virginia. I found that increases in the percent of developed land-use and other metrics of anthropogenic disturbance significantly increased nest predation, while increases in the percent of land-use without roads or buildings significantly decreased nest predation. The findings from these two chapters are consistent with population trends documented in other parts of the bog turtle range, and build upon prior studies to investigate drivers of nest predation. These results provide information that can be used by managers to aid in the conservation of this state endangered species, and suggest further courses of research for future projects.
Assessing predictive performance and transferability of species distribution models for freshwater fish in the United States
Huang, Jian (Virginia Tech, 2015-05-27)
Rigorous modeling of the spatial species distributions is critical in biogeography, conservation, resource management, and assessment of climate change. The goal of chapter 2 of this dissertation was to evaluate the potential of using historical samples to develop high-resolution species distribution models (SDMs) of stream fishes of the United States. I explored the spatial transferability and temporal transferability of stream–fish distribution models in chapter 3 and chapter 4 respectively. Chapter 2 showed that the discrimination power of SDMs for 76 non-game fish species depended on data quality, species' rarity, statistical modeling technique, and incorporation of spatial autocorrelation. The area under the Receiver-Operating-Characteristic curve (AUC) in the cross validation tended to be higher in the logistic regression and boosted regression trees (BRT) than the presence-only MaxEnt models. AUC in the cross validation was also higher for species with large geographic ranges and small local populations. Species prevalence affected discrimination power in the model training but not in the validation. In chapter 3, spatial transferability of SDMs was low for over 70% of the 21 species examined. Only 24% of logistic regression, 12% of BRT, and 16% of MaxEnt had AUC > 0.6 in the spatial transfers. Friedman's rank sum test showed that there was no significant difference in the performance of the three modeling techniques. Spatial transferability could be improved by using spatial logistic regression under Lasso regularization in the training of SDMs and by matching the range and location of predictor variables between training and transfer regions. In chapter 4, testing of temporal SDM transfer on independent samples resulted in discrimination power of the moderate to good range, with AUC > 0.6 for 80% of species in all three types of models. Most cool water species had good temporal transferability. However, biases and misspecified spread occurred frequently in the temporal model transfers. To reduce under- or over-estimation bias, I suggest rescaling the predicted probability of species presence to ordinal ranks. To mitigate inappropriate spread of predictions in the climate change scenarios, I recommended to use large training datasets with good coverage of environmental gradients, and fine-tune predictor variables with regularization and cross validation.
Behavior and population dynamics of grass carp incrementally stocked for biological control
Stich, Daniel Stephen (Virginia Tech, 2011-06-10)
Grass carp Ctenopharyngodon idella have been stocked throughout the world due to their utility as a biological control. In the United States, the species has been used to successfully control invasive, aquatic weeds such as hydrilla Hydrilla verticillata. Despite the large body of research surrounding the use of grass carp, few studies have demonstrated widely applicable methods for evaluating the success of weed control based on grass carp behavior and population dynamics. Classic methods of biological control using grass carp often rely on a single, large stocking of fish. Few of these studies have demonstrated success in achieving intermediate levels of weed control. Managers would be better equipped to make decisions regarding stocking and maintenance grass carp populations with better information about behavior, survival, and population structure. Improved decision making could result in reduced cost and increased effectiveness of stocking. In order to examine current knowledge gaps for management, I investigated the movements and habitat use of grass carp, post-stocking survival, age-specific survival rates, and population dynamics of grass carp in Lake Gaston, North Carolina and Virginia. I characterized relationships between grass carp behavior and environmental factors using radio-telemetry. The average rate of movement for grass carp in Lake Gaston was about 137 m/d. Rapid dispersal after stocking was followed by long periods of no movement. However, when time after stocking was held constant in models of behavior, fish moved about 200 m/d more in the second year after stocking than in the first year, and were found closer to shore. On average, grass carp were found about 40 m from shore in about 2.5-3.5 m of water, although mean depth of water at grass carp locations varied seasonally, being shallowest in summer and deepest in winter. Although depth of water at grass carp locations did not vary by stocking location, Grass carp were found closer to shorelines in the upper reservoir than in the lower reservoir. I found significant relationships between grass carp behavior and hydrological processes such as lake elevation and dam releases in the reservoir, as well as with other environmental factors such as water temperature, photoperiod, and weather conditions. The results of this study should be useful in better understanding how behavior can affect management decisions. Specifically, grass carp behavior appears to change with age and environmental conditions within large reservoir systems. Future research should focus more closely on the effects of large-scale flow dynamics on grass carp behavior. I estimated age-1 survival of grass carp from mark-recapture models designed for radio-tagged animals, and characterized relationships between age-1 survival and factors under the control of management, such as stocking locations and size at stocking. . According to the most-plausible model developed in this study, survival of age-1 grass carp in Lake Gaston varied throughout the year, and the probability of an individual grass carp surviving to the end of its first year (±SE) was 0.57(±0.10). According to the second-most-plausible model developed in this study, grass carp survival varied between stocking locations, and was twice as high in the upper reservoir (0.87±0.09) than in the lower reservoir (0.43±0.11). The differences in survival between stocking locations suggest that the cost-effectiveness of grass carp stocking could be improved by focusing stocking efforts in specific regions of Lake Gaston. Furthermore, none of the models developed in this study that incorporated the effects of size (length and weight) or condition factor accounted for a meaningful amount of the total model weights. These results suggest that costs of grass carp stocking could be reduced in Lake Gaston by using a smaller minimum size (352 mm, TL) than is commonly referred to in the literature (450 mm, TL). I used grass carp collected by bowfishers in Lake Gaston to characterize the age, growth, and survival of grass carp in the system. From these data, I characterized relationships between fish population dynamics and annual hydrilla coverage. Grass carp collected from Lake Gaston ranged in age 1-16 years. Growth of grass carp in Gaston was described by the von Bertalanffy growth function as Lt = 1297(1-e -0.1352 (t+1.52)). I estimated mortality from the von Bertalanffy growth parameters using methods based on growth, temperature, and age; and with each mortality estimate I estimated population size and standing biomass of grass carp. Use of age-specific mortality rates produced lower estimates of grass carp numbers and standing biomass in Lake Gaston than did the use of a single, instantaneous mortality rate for all ages. I determined that growth of grass carp slowed considerably after the fourth year and that slowed growth, in combination with changes in mortality, resulted in a decrease in the amount of hydrilla controlled by a given cohort after four years in Lake Gaston. This phenomenon resulted in an approximately linear relationship between the biomass of grass carp at year i and hectares of hydrilla at year i+3. Based on this relationship, I predicted that the biomass of grass carp necessary to reduce hydrilla coverage to the target level of 120 ha in Lake Gaston is about 91,184 kg (±38,146 kg) and that the current biomass of grass carp in Lake Gaston is about 108,073 kg (±3,609 kg). I conclude that grass carp biomass is at or near levels that should reduce hydrilla coverage to 120 ha between 2013 and 2018. This research provides an effective means for synthesis of information that is critical to understanding sterile, triploid grass carp populations when assumptions of other methods cannot be met. The results of this study should be of immediate utility to hydrilla management efforts in Lake Gaston and other systems. Furthermore, the age-specific mortality rates developed in this study should be useful as starting values for grass carp management in similar systems.
Biological and Ecological Trait Associations and Analysis of Spatial and Intraspecific Variation in Fish Traits
Henebry, Michael Lee (Virginia Tech, 2011-06-07)
Traits provide an informative approach to examine species-environment interactions. Often, species-by-species approaches are inefficient to generate generalizable ecological relationships and do not predict species responses to environmental changes based on specific traits species possess. Multiple lines of inquiry and multi-scale approaches are best for assessing environment-trait responses. This thesis examines important questions not specifically addressed before in traits-based research. Chapter one explores biological and ecological trait associations incorporating ontogenetic diet shifts for New River fishes. Niche shift analysis as a chapter one sub-objective quantitatively support where species-specific diet shifts likely occur. Strong biological-ecological trait associations, some intuitive and others not so intuitive, were found that relate biological structure to ecological function. Improved understanding of trait associations, including what factors influence others, supports inference of ecology of fishes. Chapters two and three examine spatial and intraspecific trait variability. Chapter two specifically examines large-scale life history trait variability along latitudinal gradients for twelve widely distributed fish species, including directionality of trait variation, and hypothesizing how optimal traits change with large-scale environmental factors. Strong positive and negative patterns found include average total length of newly hatched larvae, average total length at maturation, average spawning temperature, average egg diameter, and maximum length. These five traits are correlated with other adaptive attributes (i.e. growth rate, reproductive output, and longevity/population turnover rate). In contrast to latitudinal scale, Chapter three examines trait variability of white sucker (Catostomus commersonii) and fantail darter (Etheostoma flabellare) as a function of small-watershed scale spatial factors and anthropogenic disturbance. Toms Creek and Chestnut Creek white sucker and fantail darter displayed positive response to disturbance, contrary to past studies. Lower resource competition, and / or competitive exclusion of fishes with similar niche requirements are possible mechanisms. All three objectives support understanding of trait association and variability as a useful foundation in ecological applications and for formulating plans for conservation and management of species.
Bog Turtle Distribution in Virginia: Assessing Proposed Methods for Finding New Localities and Examining Movement Between Wetlands
Barron II, Joseph Charles (Virginia Tech, 2021-07-13)
Freshwater turtles are among the most threatened groups of taxa globally, and the bog turtle, Glyptemys muhlenbergii is among the most imperiled in North America. In Virginia, USA, bog turtles are restricted to occupying Appalachian Mountain fens. Fens are naturally small and fragmented wetlands characterized by elevated water tables and an open canopy. Although there is a strong need to document and monitor populations of bog turtles, efforts to do so are often limited by the low detection of the species. The first objective of this thesis was to assess proposed methodologies for locating populations of turtles on the landscape. My first chapter assessed a previously-developed habitat distribution model for bog turtles using an occupancy modeling approach. I conducted 216 surveys of 49 discretely predicted patches of habitat, recording conditions such as weather, size of wetland and time of year, hypothesized to affect detection during each survey. In addition, I assessed factors including stream entrenchment, grazing presence and surrounding impervious surfaces for each surveyed patch to identify data sources that could improve future models or better assess sites. I found that sites with larger total wetland area had higher detection per survey, possibly due to larger sites having higher densities of turtles (among other explanations), and that sites with higher amounts of impervious surfaces within their drainage were less likely to be occupied. In addition to the bog turtle, several plant species also occur in mountain fens. These species usually have a locally rare distribution or are disjuncts from a more northern latitude. Because of these traits, a high diversity of specialist plants may be indicative of a fen with a robust hydrology that has historically been less disturbed. Past site quality analyses have proposed using indicator diversity to assess sites, but no study has found if these species to tend to co-occur. My second chapter examines this hypothesis. I first chose a list of plant species that would most likely have habitat requirements similar to those of turtles. Then, at 12 sites, 6 with turtles and 6 without, I conducted a complete floral inventory. I first tested community-wide differences between the floral communities of these sites and found no difference, but when I narrowed my analysis to examining occurrence patterns of plant species determined a priori to be fen specialists and Glyptemys muhlenbergii, a pattern of co-occurrence was found. This lends support to the idea that indicator plants could be used as a tool to better evaluate sites that may have bog turtles. My last chapter investigated movement of bog turtles in a landscape impacted by anthropogenic development. Movement of turtles between adjacent sites is critical to maintaining genetic diversity and maintaining metapopulation integrity. Despite this importance, records of long distances movements among wetlands are scarce in the literature, likely due to the lack of long-term studies for areas with multiple adjacent sites. In Virginia, mark recapture monitoring has been done intermittently in a cluster of sites for over 32 years. To determine the prevalence of movement among sites for bog turtles, I examined the dataset for all instances of turtles found at sites different from their last capture. I calculated the straight-line distance for each recorded movement. I also examined the sex of the turtle to test whether sex influences movement the frequency and distance of movements. For a subset of movements, I calculated least-cost pathways to identify possible barriers to movement using a previously published resistance model. I found 21 instances where a turtle was caught at a different site than its last capture over 32 years of monitoring. Neither sex was more likely to move farther than the other. Although the study's observed rate of movement may appear low, it is likely an underestimate when detection and asymmetric sampling are taken into account. The least cost pathways analysis suggested that roads or driveways were likely crossed for a significant portion of movement events. Finally, to examine how movement may be affecting the current distribution of bog turtles, I described a method to test whether adjacency to known populations influences the probability of a new site being occupied by turtles. I prove the utility of the method by applying it to a map of bog turtle occurrences collected over this study and show that it can account for habitat differences and barriers to movement between sites as well. In spite of plausibility of the method, limitations in how occurrence data are currently collected prevent its immediate application. Together, this thesis will help managers not only find and assess wetlands on the landscape, it will also provide information about the network of connected patches on the landscape. Knowing where bog turtles are and what wetlands or sub-populations are potentially connected will allowed for a more directed and informed regional management strategy.
Buffalo and Maslow's hammer
Alexander, Kathleen A.; Blackburn, Jason K.; Frimpong, Emmanuel A. (Ecological Society of America, 2011-06)
Abraham H Maslow once said, “I suppose it is tempting, if the only tool you have is a hammer, to treat everything as if it were a nail”. Kathleen Alexander and her coauthors describe a game scout’s unsurprising finding in Botswana’s Okavango Delta, and go on to consider the statistical equivalent of that famous hammer!
A case for conserving common species
Frimpong, Emmanuel A. (PLOS, 2018-02-07)
I grew up in a country where fish were, first and foremost, food. At the age of nine or so, I started following my dad and uncle to nearby rivers to fish on weekends, and soon I learned to make my own tackle and go back to the rivers to fish with my friends. We never caught a lot of fish, but every fish we caught came home with us to be eaten. It never occurred to us to consider what ecological role these fish might play or how they fit into the ecosystem. In Ghana, West Africa, like in almost all the developing countries in sub-Saharan Africa, viewing fish primarily as food flows naturally from the need to survive. Once survival is secured, humans can start thinking about other things, like prestige or social status, for example [1]. As I entered my postdoc in ecology and conservation—me, a Ghanaian who identified more with fisheries and natural resource management—I felt the distinction keenly. I had not studied for any of my degrees under brand-name ecologists or conservation scientists, which I had come to realize was helpful in launching an academic career in our field. I understood then that professional pedigree really matters. What I know now is that this is not merely for the prestige and access such mentorship provides but for the intellectual shelter and sustenance I must provide as a principal investigator (PI). This is the story of building my niche as an ecosystem engineer. But it is also the story of recognizing the ecological role of species we take for granted—and why we should fund research on common species that may sustain the rare ones, some of which we have yet to discover.
Characterization of pond effluents and biological and physicochemical assessment of receiving waters in Ghana
Ansah, Yaw Boamah (Virginia Tech, 2010-04-09)
This study was carried out to characterize ponds and aquaculture systems, and also to determine both the potential and actual impacts of pond aquaculture effluents on receiving stream quality in the Ashanti and Brong Ahafo regions of Ghana. Water, fish and macroinvertebrate samples were collected from upstream, downstream and nearby reference streams of, and questionnaires administered to, 32 farms. Total settleable solids were higher in ponds than reference streams (p = 0.0166); suspended solids was higher in ponds than reference streams (p = 0.0159) and upstream (p = 0.0361); and total phosphorus was higher in ponds than reference (p = 0.0274) and upstream (p = 0.0269). Total nitrogen was most clearly higher in ponds than all other locations: p = 0.0016, 0.0086 and 0.0154 for the differences between ponds and reference, upstream, and downstream respectively. BOD5 level was also higher in ponds than all locations (p = 0.0048, 0.0009, and 0.0012 respectively). Also, non-guarding fish species were more abundant in reference streams than downstream (p = 0.0214) and upstream (p = 0.0251), and sand-detritus spawning fish were less predominant in reference streams than upstream (p = 0.0222) and marginally less in downstream locations (p = 0.0539). A possible subsidy-stress response within study streams was also observed. Hence, ponds are potential sources of these water quality variables to receiving streams. Effluent-receiving streams, generally, were not much different from reference streams in terms of most the metrics of community structure and function used in the comparisons. Hence, even though receiving streams in Central Ghana may not be severely impacted by aquaculture effluents at the moment, the management of pond effluents will determine the scale of future impact. Vegetable, cereal, and livestock farming could serve as additional sources of fecal streptococci and coliform bacteria and nutrient-enrichment within the study area, besides aquaculture, and so these industries must also be included in efforts to minimize pollution of these streams.
Characterization of the molecular genetic variation in wild and farmed Nile tilapia Oreochromis niloticus in Ghana for conservation and aquaculture development
Anane-Taabeah, Gifty (Virginia Tech, 2019-02-01)
The Nile tilapia Oreochromis niloticus is native to Africa and middle East, and is an important source of nutrition for many in sub-Saharan Africa. Understanding the genetic diversity within and differentiation among wild populations can help identify O. niloticus populations that are imperiled and require directed management, especially because of increasing threats to the species' long-term persistence in the wild, including habitat destruction, overfishing, climate change, and hybridization with farmed populations. Knowledge of the genetic variation among wild populations also can contribute to foundation and selection of genetically diverse populations for aquaculture. I assessed the genetic variation among tilapia populations using fin-clips collected between December 2014 and July 2017 from 14 farmed sources, mostly originating from cage farms on the Volta Lake, and 13 wild sources from nine river basins in Ghana. I also conducted a laboratory growth experiment in Ghana with two wild populations to evaluate the tolerance of different genotypes to high temperatures, to inform their development for aquaculture in West Africa. I found that pure O. niloticus populations persist in the wild but some have been extensively introgressed with the closely related species, O. aureus, which has not previously been documented in Ghana. Additionally, some wild populations appear to have recently declined significantly in numbers, likely due to overfishing and habitat modification, the latter primarily as a result of illegal alluvial mining ongoing in Ghana. Analysis of the farmed populations revealed that at least two farms were growing the unapproved genetically improved farmed tilapia (GIFT) and related strains, and that escaped individuals are admixed into some wild populations. The results of my laboratory experiment showed that O. niloticus populations occurring in northern Ghana already may be adapted to warmer temperatures and could be developed and used purposefully in aquaculture, taking advantage of their adaptation. To protect remnant pure O. niloticus populations in the wild, timely conservation decisions should be made and implemented. Protecting wild O. niloticus populations also would ensure that pure germplasms are available to develop aquaculture stocks from native populations.
Characterizing African Elephant (Loxodonta Africana) Population Dynamics and Distribution in Botswana
Barungwi, Amo Obusitswe (Virginia Tech, 2021-07-29)
The African elephant (Loxodonta africana) is an iconic species that is globally threatened. Of the total continental population, 37% is found in Botswana, the highest number and density of elephants in Africa. Elephant management in this country remains challenging and complex as the population estimates and trends calculated by government and independent researchers (from aerial survey data) differ and continue to be highly debated, both locally and internationally. To add more clarity and potentially resolve this ongoing debate, this study evaluates aerial survey data collected by the Botswana government from 1990 to 2012 and compares it with population demographic field data collected in 2019-2020 to assess Botswana's elephant population trend in a multimodal fashion. I used two different methods to evaluate aerial survey count data, the log-linear regression model and the Exponential Growth Space State (EGSS) model. In addition, I used the population demographic field data to estimate the growth rate. From the results, the average annual growth rate from the linear regression and the EGSS were both 6.17%. The growth rate estimated from the population demographics field data was estimated to be 5.17%. The age structure was comprised of the six age classes with a general increase from one age structure to the next as expected with a non significant decline in age class 3 (5-10 years) likely associated with the difficulty in differentiating this age class from the bounding age classes. There were no significant differences in the sex ratio (0.49Males:0.51Females). The age structure remained the same from 2019 to 2020, suggesting no evidence that overharvesting impacted the elephant population age structure in northern Botswana. Range expansion has also been identified with the movement of the elephant population into the southern part of the country by 2012. Analysis of count and demographic data as well as the identification of range expansion suggest that the elephant population is growing at rate close to the maximum growth rate previously identified for this species. Data do not support assertions that the population is negatively impacted through illegal offtake. Independent studies that identify Botswana's elephant population as declining have relied on comparisons that are made between data sets obtained from divergent aerial survey methodology and survey area, elements that confound such conclusions. Estimating population trends and the growth rate of an open population is complex, never-the-less, with population growth potientially derived from both birth and/or external immigation. However, demographic data collected in during this study indicate that the fucundity rate is substantial and likely a dominating driver of the positive population growth trend. Multiple measures of population growth (aerial survey and demographic assessments) also provide the opportunity for cross-validation of derived population trends. Therefore, this study recommends that the Botswana government incorporate population demographic data (i.e., age classes) into their existing monitoring protocols. Longitudinal data collection provides a critical mechanism for understanding population trends over changing environmental dynamics and should be continued. Efforts to modify or change these approaches must employ mechanisms that will account for and standardize for differences in methodology.
Cheating and Selfishness in Reproductive Interactions among Nest Associative Cyprinids
Floyd Jr, Stephen Preston (Virginia Tech, 2016-06-13)
Mutualism is an understudied interaction in ecosystems throughout the world. Within the eastern United States, one fish-fish mutualism is the nest association between Nocomis and other cyprinids. I assessed the role of host parental care while testing for the selfish-herd effect. Additionally, I examined multiple nest associates in order to elucidate potential cheaters. I utilized gonadosomatic index (GSI) to compare reproductive condition among the bluehead chub Nocomis leptocephalus and its putative nest associates in Catawba Creek, Virginia. GSI of potentially obligate associates tracked host GSI more closely than weak associates, while weak associates spawned prior to Nocomis spawning. Given their GSI patterns and behavior, central stonerollers Campostoma anomalum may be cheaters in the interaction. I used multiple experiments to test for the selfish-herd effect, the role of parental care, and how relative risk influences reproductive decisions of associates. Most eggs were located in the bottom upstream quarter of nests, and a molecular analysis revealed that stonerollers and chubs constituted the majority of identified individuals. A comparison of host-associate ratios from four nest sections failed to identify the selfish herd effect. Another experiment found that host egg covering significantly reduced egg predation. Lastly, I assessed relative egg predation risk at four potential spawning locations; predation levels did not differ significantly at any location. While GSI patterns suggest that stonerollers may be cheaters, genetic evidence indicates that stonerollers spawn on Nocomis nests. Because GSI does not completely assess reproduction, secondary stoneroller reproduction on Nocomis nests may have been overlooked.
Context-dependent outcomes in a reproductive mutualism between two freshwater fish species
Frimpong, Emmanuel A.; Peoples, Brandon K. (Wiley, 2016-01-25)
1 The development of encompassing general models of ecology is precluded by underrepresentation of certain taxa and systems. Models predicting contextdependent outcomes of biotic interactions have been tested using plants and bacteria, but their applicability to higher taxa is largely unknown. 2 We examined context dependency in a reproductive mutualism between two stream fish species: mound nest-building bluehead chub Nocomis leptocephalus and mountain redbelly dace Chrosomus oreas, which often uses N. leptocephalus nests for spawning. We hypothesized that increased predator density and decreased substrate availability would increase the propensity of C. oreas to associate with N. leptocephalus and decrease reproductive success of both species. 3 In a large-scale in situ experiment, we manipulated egg predator density and presence of both symbionts (biotic context), and replicated the experiment in habitats containing high- and low-quality spawning substrate (abiotic context). 4 Contradictory to our first hypothesis, we observed that C. oreas did not spawn without its host. The interaction outcome switched from commensalistic to mutualistic with changing abiotic and biotic contexts, although the net outcome was mutualistic. 5 The results of this study yielded novel insight into how context dependency operates in vertebrate mutualisms. Although the dilution effect provided by C. oreas positively influenced reproductive success of N. leptocephalus, it was not enough to overcome both egg predation and poor spawning habitat quality. Outcomes of the interaction may be ultimately determined by associate density. Studies of context dependency in vertebrate systems require detailed knowledge of species life-history traits.
Crayfishes of the New River watershed and Factors Affecting Their Distributions
Mouser, Joshua; Loughman, Zachary; Frimpong, Emmanuel A. (New River Symposium, 2024-04-12)
Crayfishes are keystone species within aquatic ecosystems and many species require conservation efforts to support their continued persistence. Unfortunately, we lack basic data needed to make effective conservation decisions for many crayfishes, especially those that occur in the New River watershed (hereafter New River). Therefore, we investigated coarse-scale drivers of crayfish occurrence in the New River. We used generalized linear mixed effects models to predict occurrence of eight taxa based on instream and landscape-scale environmental data and biotic interactions. There are at least 10 species of crayfishes that occur in the New River. Faxonius cristavarius, F. virilis, Cambarus appalachiensis, and C. chasmodactylus are found in larger tributaries throughout the New River. The following species occupy smaller tributaries of the New River: F. spp. (either F. sanbornii or F. obscurus), C. aff. robustus, C. cf. bartonii, and C. smilax. We found that increasing anthropogenic disturbance led to declines in F. spp., C. cf. bartonii, and C. smilax but had a positive relationship with F. cristavarius. The presence of the potentially invasive species, F. cristivarius, was negatively associated with most species. Embeddedness, substrate, proportion riffle habitat, and lithology were additional variables that structured crayfish assemblages. Our results reveal that increasing human-mediated changes and invasive crayfishes threaten the persistence of native crayfishes in the New River.
Defining Management Units for Wild Nile Tilapia Oreochromis niloticus from Nine River Basins in Ghana
Anane-Taabeah Attu, Gifty; Frimpong, Emmanuel A.; Hallerman, Eric M. (2022-01-21)
Despite the global importance of the Nile tilapia Oreochromis niloticus, especially to aquaculture, knowledge of genetic variability within native populations is still limited. While several studies have assessed genetic differentiation across the major drainage basins of Africa, relatively little effort has focused on characterizing genetic differentiation at finer scales. We assessed genetic variation in O. niloticus within and among nine drainage basins in Ghana using nuclear microsatellite DNA markers as the basis for identifying potential units of conservation among wild populations. We screened 312 wild individuals using eight nuclear microsatellite DNA markers. We found moderate genetic diversity within and differentiation among all wild populations studied, with strong signals of recent demographic bottlenecks in several populations. Genetic structure among 11 populations suggested the presence of up to ten management units (MUs). In particular, the Black Volta and the Tano–Asuhyea populations, which were the most genetically distinct and geographically isolated and may be most at risk of loss of genetic diversity over time, may well represent evolutionary significant units. Therefore, at the minimum, the Black Volta and Tano–Asuhyea populations should be prioritized for conservation actions to sustain them over the long-term.
Defining rarity and determining the mechanisms of rarity for North American freshwater fishes
Pritt, Jeremy Joseph (Virginia Tech, 2010-01-06)
Conserving rare species and protecting biodiversity depends on sound information on the nature of rarity. Rarity is multidimensional, presenting the need for a quantitative classification scheme by which to label species as rare or common. I defined rarity for freshwater fishes based on the range extents, habitat breadths, and site abundance and examined the relationship between these dimensions of rarity and imperilment. Imperiled fishes were most often rare by all three dimensions, whereas undesignated species were most often common by all three dimensions. Next, I examined the effect of sampling intensity on observed rarity of stream fish using different numerical and proportional rarity criteria and found that increasing sampling intensity increased the number of species labelled as rare with proportional criteria but did not affect the number of species labelled as rare with numerical criteria. Additional electrofishing passes within a fixed reach increases the likelihood of detecting rare and endemic species. A tradeoff between information collected and sampling resources should be carefully considered in the context of objectives when sampling for rare species. Finally, I examined the effect of regional and watershed habitat variables, biotic interaction variables, and instream habitat variables, on the rare or common status on 23 North American freshwater fishes. I also compared biological and reproductive traits among species classified into the rarity framework. Rarity was successfully explained in 19 of the 23 species and I found that regional and watershed habitat variables were the most important predictors of rarity. I also found that species large body size, high fecundity, and long age at maturity were generally more common by range extent and site abundance while those species that did not guard nests were more frequently rare by site abundance. These results indicate that large-scale variables can be used to successfully predict species rarity and rare fishes differ in their biology and reproduction from common fishes.
Detectability, movement, and population structure of the endangered Candy Darter in Virginia
McBaine, Kathryn E. (Virginia Tech, 2021-07-15)
Minnows and darters are the most imperiled freshwater fish species in North America as a result of habitat degradation and restricted ranges, which often results in isolated populations. The Candy Darter Etheostoma osburni was recently listed as Endangered and may represent a suite of other imperiled fishes in terms of their ecology, life-history traits, and conservation needs. I examined the effects of microhabitat features, sampling effort, species abundance and morphology on riffle-dwelling species. My results confirm many of the well-known influences on detection, while adding to the knowledge of species-specific attributes that can influence detection of common riffle species. Using physical marking and molecular methods, I describe movement patterns and provide insight into the spatial distribution of related pairs and reproductive contribution of the endangered Candy Darter. Minimum detected movements of adults were greater for molecular methods than for visual markings. Indirect movements inferred from the spatial extent between related pairs indicated that parents and offspring move along their entire 18.8-km distribution in Stony Creek, while individual parents and offspring in Laurel Creek move throughout half of their 4.25-km distribution. Additionally, I provide evidence that the lifetime reproductive contribution of Candy Darter is greater than previously described. Using microsatellite DNA markers, I describe population genetic structure and estimate effective population sizes of the four extant populations of Candy Darter in Virginia and provide insight into which populations may be successful as sources for reintroduction or translocation efforts. The four extant populations in Virginia are demographically isolated, but results also suggest historical connectivity. Effective population estimates for all populations were less than the recommended 500 to maintain evolutionary potential, but three populations numbered > 130, indicating they may be viable options for source populations for translocations. My results suggest that all populations may benefit from translocations to overcome genetic drift and inbreeding and to safeguard the historical genetic variation of the species.

Browsing by Author "Frimpong, Emmanuel A."

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