Genome-wide SNP discovery in native American and Hungarian Robinia pseudoacacia genotypes using next-generation double-digest restriction-site-associated DNA sequencing (ddRAD-Seq)

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dc.contributor.authorKobolkuti, Zoltan A.en
dc.contributor.authorToth, Endre Gy.en
dc.contributor.authorKeseru, Zsolten
dc.contributor.authorFike, John H.en
dc.contributor.authorBolla, Benceen
dc.contributor.authorAbri, Tamasen
dc.contributor.authorBorovics, Attilaen
dc.contributor.authorBenke, Attilaen
dc.contributor.authorCseke, Klaraen
dc.date.accessioned2023-03-21T16:39:36Zen
dc.date.available2023-03-21T16:39:36Zen
dc.date.issued2023-04en
dc.description.abstractRobinia pseudoacacia L. (commonly known as black locust) is an economically and environmentally important plant, native to the eastern USA, and introduced into several European countries, including Hungary. An early successional leguminous tree, the black locust is characterized by tolerance to degraded sites, rapid growth rate, dense and rot-resistant wood, and heavy flowering. Due to its economic potential and environmental impact, the historic Hungarian breeding strategy targeted not only increased wood production but also in wood and honey-production quality. However, because many important features of the species are under polygenic control, genome-wide genetic data provided by high-throughput sequencing technology could make possible the identification of gene variants with identifiable functional effects on complex traits. Furthermore, the evaluation of the breeding efforts carried out so far would be also achievable, by comparing bred/selected genotypes with those from the original habitat. This paper provides a genomic dataset with highly variable SNP markers from native American and Hungarian Robinia pseudoacacia L. individuals. These SNP loci can be used to assess genetic differentiation, and to detect signatures of polygenic determination of economically important traits, providing a basis for further research into this species.en
dc.description.notesOpen access funding provided by University of Sopron. This article was made in frame of the project TKP2021-NKTA-43 which has been implemented with the support provided by the Ministry of Innovation and Technology of Hungary (successor: Ministry of Culture and Innovation of Hungary) from the National Research, Development and Innovation Fund, financed under the TKP2021-NKTA funding scheme.en
dc.description.sponsorshipUniversity of Sopron; Ministry of Innovation and Technology of Hungary from the National Research, Development and Innovation Fund under the TKP2021-NKTA funding scheme [TKP2021-NKTA-43, TKP2021-NKTA]en
dc.description.versionPublished versionen
dc.format.mimetypeapplication/pdfen
dc.identifier.doihttps://doi.org/10.1007/s11295-023-01589-8en
dc.identifier.eissn1614-2950en
dc.identifier.issue2en
dc.identifier.urihttp://hdl.handle.net/10919/114138en
dc.identifier.volume19en
dc.language.isoenen
dc.publisherSpringeren
dc.rightsCreative Commons Attribution 4.0 Internationalen
dc.rights.urihttp://creativecommons.org/licenses/by/4.0/en
dc.subjectSingle nucleotide polymorphismen
dc.subjectDouble digest RAD-Seqen
dc.subjectBlack locusten
dc.subjectGenetic variationen
dc.titleGenome-wide SNP discovery in native American and Hungarian Robinia pseudoacacia genotypes using next-generation double-digest restriction-site-associated DNA sequencing (ddRAD-Seq)en
dc.title.serialTree Genetics & Genomesen
dc.typeArticle - Refereeden
dc.type.dcmitypeTexten

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