The PATRIC Bioinformatics Resource Center: expanding data and analysis capabilities

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dc.contributor.authorDavis, James J.en
dc.contributor.authorWattam, Alice R.en
dc.contributor.authorAziz, Ramy K.en
dc.contributor.authorBrettin, Thomasen
dc.contributor.authorButler, Ralphen
dc.contributor.authorButler, Rory M.en
dc.contributor.authorChlenski, Philippeen
dc.contributor.authorConrad, Nealen
dc.contributor.authorDickerman, Allan W.en
dc.contributor.authorDietrich, Emily M.en
dc.contributor.authorGabbard, Joseph L.en
dc.contributor.authorGerdes, Svetlanaen
dc.contributor.authorGuard, Andrewen
dc.contributor.authorKenyon, Ronald W.en
dc.contributor.authorMachi, Dustinen
dc.contributor.authorMao, Chunhongen
dc.contributor.authorMurphy-Olson, Daniel E.en
dc.contributor.authorNguyen, Marcusen
dc.contributor.authorNordberg, Eric K.en
dc.contributor.authorOlsen, Gary J.en
dc.contributor.authorOlson, Robert D.en
dc.contributor.authorOverbeek, Jamie C.en
dc.contributor.authorOverbeek, Rossen
dc.contributor.authorParrello, Bruceen
dc.contributor.authorPusch, Gordon D.en
dc.contributor.authorShukla, Mauliken
dc.contributor.authorThomas, Chrisen
dc.contributor.authorVanOeffelen, Margoen
dc.contributor.authorVonstein, Veronikaen
dc.contributor.authorWarren, Andrew S.en
dc.contributor.authorXia, Fangfangen
dc.contributor.authorXie, Dawenen
dc.contributor.authorYoo, Hyunseungen
dc.contributor.authorStevens, Rick L.en
dc.contributor.departmentIndustrial and Systems Engineeringen
dc.date.accessioned2020-05-27T14:02:20Zen
dc.date.available2020-05-27T14:02:20Zen
dc.date.issued2020-01-08en
dc.description.abstractThe PathoSystems Resource Integration Center (PATRIC) is the bacterial Bioinformatics Resource Center funded by the National Institute of Allergy and Infectious Diseases (https://www.patricbrc.org). PATRIC supports bioinformatic analyses of all bacteria with a special emphasis on pathogens, offering a rich comparative analysis environment that provides users with access to over 250 000 uniformly annotated and publicly available genomes with curated metadata. PATRIC offers web-based visualization and comparative analysis tools, a private workspace in which users can analyze their own data in the context of the public collections, services that streamline complex bioinformatic workflows and command-line tools for bulk data analysis. Over the past several years, as genomic and other omics-related experiments have become more cost-effective and widespread, we have observed considerable growth in the usage of and demand for easy-to-use, publicly available bioinformatic tools and services. Here we report the recent updates to the PATRIC resource, including new web-based comparative analysis tools, eight new services and the release of a command-line interface to access, query and analyze data.en
dc.description.notesNational Institute of Allergy and Infectious Diseases (NIAID) [HHSN272201400027C to R.S.]. Funding for open access charge: NIAID.en
dc.description.sponsorshipNational Institute of Allergy and Infectious Diseases (NIAID)United States Department of Health & Human ServicesNational Institutes of Health (NIH) - USANIH National Institute of Allergy & Infectious Diseases (NIAID) [HHSN272201400027C]; NIAIDUnited States Department of Health & Human ServicesNational Institutes of Health (NIH) - USANIH National Institute of Allergy & Infectious Diseases (NIAID)en
dc.format.mimetypeapplication/pdfen
dc.identifier.doihttps://doi.org/10.1093/nar/gkz943en
dc.identifier.eissn1362-4962en
dc.identifier.issn0305-1048en
dc.identifier.issueD1en
dc.identifier.pmid31667520en
dc.identifier.urihttp://hdl.handle.net/10919/98561en
dc.identifier.volume48en
dc.language.isoenen
dc.rightsCreative Commons CC0 1.0 Universal Public Domain Dedicationen
dc.rights.urihttp://creativecommons.org/publicdomain/zero/1.0/en
dc.titleThe PATRIC Bioinformatics Resource Center: expanding data and analysis capabilitiesen
dc.title.serialNucleic Acids Researchen
dc.typeArticle - Refereeden
dc.type.dcmitypeTexten
dc.type.dcmitypeStillImageen

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Scholarly Works, Industrial and Systems Engineering
Destination Area: Data and Decisions (D&D)