Community-Driven Metadata Standards for Agricultural Microbiome Research

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dc.contributor.authorDundore-Arias, Jose Pabloen
dc.contributor.authorEloe-Fadrosh, Emiley A.en
dc.contributor.authorSchriml, Lynn M.en
dc.contributor.authorBeattie, Gwyn A.en
dc.contributor.authorBrennan, Fiona P.en
dc.contributor.authorBusby, Posy E.en
dc.contributor.authorCalderon, Rosalie B.en
dc.contributor.authorCastle, Sarah C.en
dc.contributor.authorEmerson, Joanne B.en
dc.contributor.authorEverhart, Sydney E.en
dc.contributor.authorEversole, Kellyeen
dc.contributor.authorFrost, Kenneth E.en
dc.contributor.authorHerr, Joshua R.en
dc.contributor.authorHuerta, Alejandra I.en
dc.contributor.authorIyer-Pascuzzi, Anjali S.en
dc.contributor.authorKalil, Audrey K.en
dc.contributor.authorLeach, Jan E.en
dc.contributor.authorLeonard, J.en
dc.contributor.authorMaul, Jude E.en
dc.contributor.authorPrithiviraj, Bharathen
dc.contributor.authorPotrykus, Martaen
dc.contributor.authorRedekar, Neelam R.en
dc.contributor.authorRojas, J. Alejandroen
dc.contributor.authorSilverstein, Kevin A. T.en
dc.contributor.authorTomso, Daniel J.en
dc.contributor.authorTringe, Susannah G.en
dc.contributor.authorVinatzer, Boris A.en
dc.contributor.authorKinkel, Linda L.en
dc.contributor.departmentSchool of Plant and Environmental Sciencesen
dc.date.accessioned2021-04-14T12:54:50Zen
dc.date.available2021-04-14T12:54:50Zen
dc.date.issued2020-02-20en
dc.description.abstractAccelerating the pace of microbiome science to enhance crop productivity and agroecosystem health will require transdisciplinary studies, comparisons among datasets, and synthetic analyses of research from diverse crop management contexts. However, despite the widespread availability of crop-associated microbiome data, variation in field sampling and laboratory processing methodologies, as well as metadata collection and reporting, significantly constrains the potential for integrative and comparative analyses. Here we discuss the need for agriculture-specific metadata standards for microbiome research, and propose a list of "required" and "desirable" metadata categories and ontologies essential to be included in a future minimum information metadata standards checklist for describing agricultural microbiome studies. We begin by briefly reviewing existing metadata standards relevant to agricultural microbiome research, and describe ongoing efforts to enhance the potential for integration of data across research studies. Our goal is not to delineate a fixed list of metadata requirements. Instead, we hope to advance the field by providing a starting point for discussion, and inspire researchers to adopt standardized procedures for collecting and reporting consistent and well-annotated metadata for agricultural microbiome research.en
dc.description.adminPublic domain – authored by a U.S. government employeeen
dc.description.notesThis material was supported in part by the National Science Foundation under grant number 1714276. Any opinions, findings, and conclusions or recommendations expressed in this material are those of the authors and do not necessarily reflect the views of the National Science Foundation.en
dc.description.sponsorshipNational Science FoundationNational Science Foundation (NSF) [1714276]en
dc.format.mimetypeapplication/pdfen
dc.identifier.doihttps://doi.org/10.1094/PBIOMES-09-19-0051-Pen
dc.identifier.eissn2471-2906en
dc.identifier.issue2en
dc.identifier.urihttp://hdl.handle.net/10919/103018en
dc.identifier.volume4en
dc.language.isoenen
dc.rightsPublic Domainen
dc.rights.urihttp://creativecommons.org/publicdomain/mark/1.0/en
dc.subjectgenomicsen
dc.subjectmeta-analysisen
dc.subjectmetagenomicsen
dc.subjectmicrobiomeen
dc.subjectomicsen
dc.subjectontologiesen
dc.subjectphytobiomeen
dc.subjectsyntheticen
dc.titleCommunity-Driven Metadata Standards for Agricultural Microbiome Researchen
dc.title.serialPhytobiomes Journalen
dc.typeArticle - Refereeden
dc.type.dcmitypeTexten
dc.type.dcmitypeStillImageen

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Destination Area: Data and Decisions (D&D)