Development of high-throughput phenotyping methods and evaluation of morphological and physiological characteristics of peanut in a sub-humid environment
| dc.contributor.author | Sarkar, Sayantan | en |
| dc.contributor.committeechair | Balota, Maria | en |
| dc.contributor.committeemember | McCall, David Scott | en |
| dc.contributor.committeemember | Abbott, A. Lynn | en |
| dc.contributor.committeemember | Thomason, Wade E. | en |
| dc.contributor.committeemember | Cazenave, Alexandre Brice | en |
| dc.contributor.committeemember | Oakes, Joseph Carroll | en |
| dc.contributor.department | Plant Pathology, Physiology and Weed Science | en |
| dc.date.accessioned | 2022-06-30T06:00:07Z | en |
| dc.date.available | 2022-06-30T06:00:07Z | en |
| dc.date.issued | 2021-01-05 | en |
| dc.description.abstract | Peanut (Arachis hypogaea L.) is an important food crop in the USA and worldwide with high net returns but yield in excess of 4500 kg ha-1 is needed to offset the production costs. Because yield is limited by biotic and abiotic stresses, cultivars with stress tolerance are needed to optimize yield. The U.S. peanut mini-core germplasm collection is a valuable resource that breeders can use to improve stress tolerance in peanut. Phenotyping for plant height, leaf area, and leaf wilting have been used as proxies for the desired tolerance traits. However, proximal data collection, i.e. measurements are taken on individual plants or in the proximity, is slow. Remote data collection and machine learning techniques for analysis offer a high-throughput phenotyping (HTP) alternative to manual measurements that could help breeding for stress tolerance. The objectives of this study were to 1) develop HTP methods using aerial remote sensing; 2) evaluate the mini-core collection in SE Virginia; and 3) perform a detailed physiological analysis on a sub-set of 28 accessions from the mini-core collection under drought stress, i.e. the sub-set was selected based on contrasting differences under drought in three states, Virginia, Texas, and Oklahoma. To address these objectives, replicated experiments were performed in the field at the Tidewater Agricultural Research and Extension Center in Suffolk, VA, in 2017, 2018, and 2019, under rainfed, irrigated, and controlled conditions using rainout shelters to induce drought. Proximal data collection involved physiological, morphological, and yield measurements. Remote data collection was performed aerially and included collection of red-green-blue (RGB) images and canopy reflectance in the visible, near infra-red, and infra-red spectra. This information was used to estimate plant characteristics related to growth and drought tolerance. Under objective 1), we developed HTP for plant height with 85-95% accuracy, LAI with 85-88% accuracy, and wilting with 91-99% accuracy; this was done with significant reduction of time as compared to proximal data collection. Under objectives 2) and 3), we determined that shorter genotypes were more drought tolerant than taller genotypes; and identified CC650 less wilted and with increased carbon assimilation, electron transport, quantum efficiency, and yield than other accessions. | en |
| dc.description.abstractgeneral | Peanut is a profitable food crop in the USA but has high input costs. Pod yield over 4500 kg ha-1 is required for a profitable production, which is challenging in dry and hot years, and under disease pressure. Varieties tolerant to dry weather conditions (drought) and disease presence are required to sustain production. A collection of 112 peanut varieties is available for researchers to study the mechanisms of tolerance to drought and disease, and identify tolerant varieties to these stresses. Plant characteristics including height, leaf area, and leaf wilting can be used as proxies to estimate stress tolerance and yield, and identify tolerant varieties. How to measure these characteristics is very important. We think that using images collected by a drone and automated analysis by specific computer programs is the easiest, fastest, and most accurate way. Therefore, the objectives of my study were to 1) use drones and cameras to collect images, and computer programs to derive plant characteristics from these images, 2) evaluate the peanut collection to identify varieties with tolerance to drought and disease, and 3) evaluate in depth a sub-set of 28 varieties from this collection under controlled drought conditions to further learn about peanut mechanisms of tolerance to drought and diseases. Field experiments were conducted in 2017, 2018, and 2019, at the Tidewater Agricultural Research and Extension Center in Suffolk, VA. For some tests, we used rainout shelters to mimic drought. We measured plant height, leaf area, color, and wilting, canopy temperature, photosynthesis, and pod yield. From a drone, we collected images in the visible and invisible radiation and, using specific computer programs, estimated plant characteristics with 95% accuracy for height, 88% for leaf area, and 91% for leaf wilting under drought. We concluded that taller varieties were more susceptible to drought than shorter varieties. Peanut varieties CC650 and CC068 had higher end of season yield. The study showed that drought reduced several key mechanisms of photosynthesis including electron transport; and reduced the end of season yield. Variety CC650 performed better under drought than other varieties of the collection. | en |
| dc.description.degree | Doctor of Philosophy | en |
| dc.format.medium | ETD | en |
| dc.identifier.other | vt_gsexam:28631 | en |
| dc.identifier.uri | http://hdl.handle.net/10919/111060 | en |
| dc.publisher | Virginia Tech | en |
| dc.rights | Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International | en |
| dc.rights.uri | http://creativecommons.org/licenses/by-nc-nd/4.0/ | en |
| dc.subject | Peanut | en |
| dc.subject | plant physiology | en |
| dc.subject | remote sensing | en |
| dc.subject | high-throughput phenotyping (HTP) | en |
| dc.subject | precision agriculture | en |
| dc.title | Development of high-throughput phenotyping methods and evaluation of morphological and physiological characteristics of peanut in a sub-humid environment | en |
| dc.type | Dissertation | en |
| thesis.degree.discipline | Plant Pathology, Physiology and Weed Science | en |
| thesis.degree.grantor | Virginia Polytechnic Institute and State University | en |
| thesis.degree.level | doctoral | en |
| thesis.degree.name | Doctor of Philosophy | en |