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The Sol Genomics Network (SGN)-from genotype to phenotype to breeding

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dc.contributor.authorFernandez-Pozo, Noeen
dc.contributor.authorMenda, Naamaen
dc.contributor.authorEdwards, Jeremy D.en
dc.contributor.authorSaha, Suryaen
dc.contributor.authorTecle, Isaak Y.en
dc.contributor.authorStrickler, Susan R.en
dc.contributor.authorBombarely, Aurelianoen
dc.contributor.authorFisher-York, Thomasen
dc.contributor.authorPujar, Anuradhaen
dc.contributor.authorFoerster, Hartmuten
dc.contributor.authorYan, Aiminen
dc.contributor.authorMueller, Lukas A.en
dc.contributor.departmentSchool of Plant and Environmental Sciencesen
dc.date.accessioned2019-04-12T14:55:18Zen
dc.date.available2019-04-12T14:55:18Zen
dc.date.issued2015-01-28en
dc.description.abstractThe Sol Genomics Network (SGN, http://solgenomics.net) is a web portal with genomic and phenotypic data, and analysis tools for the Solanaceae family and close relatives. SGN hosts whole genome data for an increasing number of Solanaceae family members including tomato, potato, pepper, eggplant, tobacco and Nicotiana benthamiana. The database also stores loci and phenotype data, which researchers can upload and edit with user-friendly web interfaces. Tools such as BLAST, GBrowse and JBrowse for browsing genomes, expression and map data viewers, a locus community annotation system and a QTL analysis tools are available. A new tool was recently implemented to improve Virus-Induced Gene Silencing (VIGS) constructs called the SGN VIGS tool. With the growing genomic and phenotypic data in the database, SGN is now advancing to develop new web-based breeding tools and implement the code and database structure for other species or clade-specific databases.en
dc.description.notesNational Science Foundation (NSF); United States Department of Agriculture (USDA); Cornell University; Boyce Thompson Institute. Funding for open access charge: NSF [IOS #0820612].en
dc.description.sponsorshipNational Science Foundation (NSF); United States Department of Agriculture (USDA); Cornell University; Boyce Thompson Institute; NSF [IOS] [0820612]en
dc.format.mimetypeapplication/pdfen
dc.identifier.doihttps://doi.org/10.1093/nar/gku1195en
dc.identifier.eissn1362-4962en
dc.identifier.issn0305-1048en
dc.identifier.issueD1en
dc.identifier.pmid25428362en
dc.identifier.urihttp://hdl.handle.net/10919/88949en
dc.identifier.volume43en
dc.language.isoenen
dc.rightsCreative Commons Attribution 4.0 Internationalen
dc.rights.urihttp://creativecommons.org/licenses/by/4.0/en
dc.subjectprovides insightsen
dc.subjectsequenceen
dc.subjectdatabaseen
dc.subjectevolutionen
dc.subjectbiologyen
dc.subjectcollectionen
dc.subjectbrowseren
dc.subjectlinkingen
dc.subjecttoolen
dc.titleThe Sol Genomics Network (SGN)-from genotype to phenotype to breedingen
dc.title.serialNucleic Acids Researchen
dc.typeArticle - Refereeden
dc.type.dcmitypeTexten

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