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The iPlant collaborative: cyberinfrastructure for plant biology

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dc.contributor.authorGoff, Stephen A.en
dc.contributor.authorVaughn, Matthewen
dc.contributor.authorMcKay, Sheldonen
dc.contributor.authorLyons, Ericen
dc.contributor.authorStapleton, Ann E.en
dc.contributor.authorGessler, Damianen
dc.contributor.authorMatasci, Naimen
dc.contributor.authorWang, Liyaen
dc.contributor.authorHanlon, Matthewen
dc.contributor.authorLenards, Andrewen
dc.contributor.authorMuir, Andyen
dc.contributor.authorMerchant, Niraven
dc.contributor.authorLowry, Sonyaen
dc.contributor.authorMock, Stephenen
dc.contributor.authorHelmus, Matthew R.en
dc.contributor.authorKubach, Adamen
dc.contributor.authorNarro, Marthaen
dc.contributor.authorHopkins, Nicoleen
dc.contributor.authorMicklos, Daviden
dc.contributor.authorHilgert, Uween
dc.contributor.authorGonzales, Michaelen
dc.contributor.authorJordan, Chrisen
dc.contributor.authorSkidmore, Edwinen
dc.contributor.authorDooley, Rionen
dc.contributor.authorCazes, Johnen
dc.contributor.authorMcLay, Roberten
dc.contributor.authorLu, Zhenyuanen
dc.contributor.authorPasternak, Shiranen
dc.contributor.authorKoesterke, Larsen
dc.contributor.authorPiel, William H.en
dc.contributor.authorGrene, Ruthen
dc.contributor.authorNoutsos, Christosen
dc.contributor.authorGendler, Karlaen
dc.contributor.authorFeng, Xinen
dc.contributor.authorTang, Chunlaoen
dc.contributor.authorLent, Monicaen
dc.contributor.authorKim, Seung-Jinen
dc.contributor.authorKvilekval, Kristianen
dc.contributor.authorManjunath, B. S.en
dc.contributor.authorTannen, Valen
dc.contributor.authorStamatakis, Alexandrosen
dc.contributor.authorSanderson, Michaelen
dc.contributor.authorWelch, Stephen M.en
dc.contributor.authorCranston, Karen A.en
dc.contributor.authorSoltis, Pamela S.en
dc.contributor.authorSoltis, Douglas E.en
dc.contributor.authorO'Meara, Brianen
dc.contributor.authorAne, Cecileen
dc.contributor.authorBrutnell, Tomen
dc.contributor.authorKleibenstein, Daniel J.en
dc.contributor.authorWhite, Jeffery W.en
dc.contributor.authorLeebens-Mack, James H.en
dc.contributor.authorDonoghue, Michael J.en
dc.contributor.authorSpalding, Edgar P.en
dc.contributor.authorVision, Todd J.en
dc.contributor.authorMyers, Christopher R.en
dc.contributor.authorLowenthal, David K.en
dc.contributor.authorEnquist, Brian J.en
dc.contributor.authorBoyle, Braden
dc.contributor.authorAkoglu, Alien
dc.contributor.authorAndrews, Gregen
dc.contributor.authorRam, Sudhaen
dc.contributor.authorWare, Doreenen
dc.contributor.authorStein, Lincolnen
dc.contributor.authorStanzione, Danen
dc.contributor.departmentSchool of Plant and Environmental Sciencesen
dc.date.accessioned2019-05-02T13:13:53Zen
dc.date.available2019-05-02T13:13:53Zen
dc.date.issued2011en
dc.description.abstractThe iPlant Collaborative (iPlant) is a United States National Science Foundation (NSF) funded project that aims to create an innovative, comprehensive, and foundational cyberinfrastructure in support of plant biology research (PSCIC, 2006). iPlant is developing cyberinfrastructure that uniquely enables scientists throughout the diverse fields that comprise plant biology to address Grand Challenges in new ways, to stimulate and facilitate cross-disciplinary research, to promote biology and computer science research interactions, and to train the next generation of scientists on the use of cyberinfrastructure in research and education. Meeting humanity's projected demands for agricultural and forest products and the expectation that natural ecosystems be managed sustainably will require synergies from the application of information technologies. The iPlant cyberinfrastructure design is based on an unprecedented period of research community input, and leverages developments in high-performance computing, data storage, and cyberinfrastructure for the physical sciences. iPlant is an open-source project with application programming interfaces that allow the community to extend the infrastructure to meet its needs. iPlant is sponsoring community-driven workshops addressing specific scientific questions via analysis tool integration and hypothesis testing. These workshops teach researchers how to add bioinformatics tools and/or datasets into the iPlant cyberinfrastructure enabling plant scientists to perform complex analyses on large datasets without the need to master the command-line or high-performance computational services.en
dc.description.notesThe iPlant Collaborative is funded by a grant from the National Science Foundation Plant Cyberinfrastructure Program (#DBI-0735191).en
dc.description.sponsorshipNational Science Foundation Plant Cyberinfrastructure Program [DBI-0735191]en
dc.format.mimetypeapplication/pdfen
dc.identifier.doihttps://doi.org/10.3389/fpls.2011.00034en
dc.identifier.eissn1664-462Xen
dc.identifier.other34en
dc.identifier.pmid22645531en
dc.identifier.urihttp://hdl.handle.net/10919/89338en
dc.identifier.volume2en
dc.language.isoenen
dc.publisherFrontiersen
dc.rightsCreative Commons Attribution 4.0 Internationalen
dc.rights.urihttp://creativecommons.org/licenses/by/4.0/en
dc.subjectcyberinfrastructureen
dc.subjectbioinformaticsen
dc.subjectplant biologyen
dc.subjectcomputational biologyen
dc.titleThe iPlant collaborative: cyberinfrastructure for plant biologyen
dc.title.serialFrontiers In Plant Scienceen
dc.typeArticle - Refereeden
dc.type.dcmitypeTexten

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