Scholarly Works, Chemistry

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TETRIS-ADAPT-VQE: An adaptive algorithm that yields shallower, denser circuit Ansätze
Anastasiou, Panagiotis G.; Chen, Yanzhu; Mayhall, Nicholas J.; Barnes, Edwin Fleming; Economou, Sophia E. (American Physical Society, 2024-03-07)
Adaptive quantum variational algorithms are particularly promising for simulating strongly correlated systems on near-term quantum hardware, but they are not yet viable due, in large part, to the severe coherence time limitations on current devices. In this paper, we introduce an algorithm called TETRIS-ADAPT-VQE (tiling efficient trial circuits with rotations implemented simultaneously adaptive derivative-assembled problem-tailored Ansatz variational quantum eigensolver), which iteratively builds up variational Ansätze a few operators at a time in a way dictated by the problem being simulated. This algorithm is a modified version of the ADAPT-VQE algorithm, in which the one-operator-at-a-time rule is lifted to allow for the addition of multiple operators with disjoint supports in each iteration. TETRIS-ADAPT-VQE results in denser but significantly shallower circuits, without increasing the number of controlled-not gates or variational parameters. Its advantage over the original algorithm in terms of circuit depths increases with the system size. Moreover, the expensive step of measuring the energy gradient with respect to each candidate unitary at each iteration is performed only a fraction of the time compared with ADAPT-VQE. These improvements bring us closer to the goal of demonstrating a practical quantum advantage on quantum hardware.
Mosquito mutations F290V and F331W expressed in acetylcholinesterase of the sand fly Phlebotomus papatasi (Scopoli): biochemical properties and inhibitor sensitivity
Temeyer, Kevin B.; Tong, Fan; Schlechte, Kristie G.; Chen, Qiao-hong; Carlier, Paul R.; Pérez de León, Adalberto Á.; Bloomquist, Jeffrey R. (2025-02-18)
Background: The Old World sand fly, Phlebotomus papatasi (Scopoli), a vector of zoonotic cutaneous leishmaniasis, is usually controlled by insecticides, including anticholinesterases. Previous studies have revealed 85% amino acid sequence identity of recombinant P. papatasi acetylcholinesterase (rPpAChE1) to mosquito AChE. They identified synthetic carbamates that selectively inhibited rPpAChE1 and circumvented the G119S mutation responsible for high-level resistance to anticholinesterases. This study reports the construction, baculovirus expression, and biochemical properties of rPpAChE1 containing the F290V and F331W orthologous mutations from mosquitoes. Methods: Recombinant PpAChE1 enzymes with or without the F290V, F331W, and G119S orthologous mosquito mutations were expressed in Sf21cells utilizing the baculoviral system. Ellman assays determined changes in catalytic properties and inhibitor sensitivity resulting from wild type and mutant rPpAChE1 containing single or combinations of orthologous mosquito mutations. Results: Each of the orthologous mutations (F290V, F331W, and G119S) from mosquito AChE significantly reduced inhibition sensitivity to organophosphate or carbamate pesticides, and catalytic activity was lost when they were expressed in combination. Novel synthetic carbamates were identified that significantly inhibited the rPpAChEs expressing each of the single orthologous mosquito mutations. Conclusions: These novel carbamates could be developed as efficacious insecticides, with improved specificity and safety for use in sand fly or mosquito populations expressing the mutant AChEs.
Parametrization and optimizability of pulse-level variational quantum eigensolvers
Sherbert, Kyle M.; Amer, Hisham; Economou, Sophia E.; Barnes, Edwin; Mayhall, Nicholas J. (American Physical Society, 2025-02-14)
In conventional variational quantum eigensolvers (VQEs), trial states are prepared by applying series of parameterized gates to a reference state, with the gate parameters being varied to minimize the energy of the target system. Recognizing that the gates are intermediates which are ultimately compiled into a set of control pulses to be applied to each qubit in the lab, the recently proposed ctrl-VQE algorithm takes the amplitudes, frequencies, and phases of the pulse as the variational parameters used to minimize the molecular energy. In this work, we explore how all three degrees of freedom interrelate with one another. To this end, we consider several distinct strategies to parameterize the control pulses, assessing each one through numerical simulations of a transmonlike device. For each parameterization, we contrast the pulse duration required to prepare a good ansatz, and the difficulty to optimize that ansatz from a well-defined initial state. We deduce several guiding heuristics to implement practical ctrl-VQE in hardware, which we anticipate will generalize for generic device architectures.
A Renewably Sourced, Circular Photopolymer Resin for Additive Manufacturing
Machado, Thiago O.; Stubbs, Connor J.; Chiaradia, Viviane; Alraddadi, Maher A.; Brandolese, Arianna; Worch, Joshua C.; Dove, Andrew P. (Nature Portfolio, 2024-05-15)
The additive manufacturing of photopolymer resins by means of vat photopolymerization enables the rapid fabrication of bespoke 3D-printed parts. Advances in methodology have continually improved resolution and manufacturing speed, yet both the process design and resin technology have remained largely consistent since its inception in the 1980s1. Liquid resin formulations, which are composed of reactive monomers and/or oligomers containing (meth)acrylates and epoxides, rapidly photopolymerize to create crosslinked polymer networks on exposure to a light stimulus in the presence of a photoinitiator2. These resin components are mostly obtained from petroleum feedstocks, although recent progress has been made through the derivatization of renewable biomass3–6 and the introduction of hydrolytically degradable bonds7–9. However, the resulting materials are still akin to conventional crosslinked rubbers and thermosets, thus limiting the recyclability of printed parts. At present, no existing photopolymer resin can be depolymerized and directly re-used in a circular, closed-loop pathway. Here we describe a photopolymer resin platform derived entirely from renewable lipoates that can be 3D-printed into high-resolution parts, efficiently deconstructed and subsequently reprinted in a circular manner. Previous inefficiencies with methods using internal dynamic covalent bonds10–17 to recycle and reprint 3D-printed photopolymers are resolved by exchanging conventional (meth)acrylates for dynamic cyclic disulfide species in lipoates. The lipoate resin platform is highly modular, whereby the composition and network architecture can be tuned to access printed materials with varied thermal and mechanical properties that are comparable to several commercial acrylic resins.
Scaling adaptive quantum simulation algorithms via operator pool tiling
Van Dyke, John S.; Shirali, Karunya; Barron, George S.; Mayhall, Nicholas J.; Barnes, Edwin; Economou, Sophia E. (American Physical Society, 2024-02-16)
Adaptive variational quantum simulation algorithms use information from a quantum computer to dynamically create optimal trial wave functions for a given problem Hamiltonian. A key ingredient in these algorithms is a predefined operator pool from which trial wave functions are constructed. Finding suitable pools is critical for the efficiency of the algorithm as the problem size increases. Here, we present a technique called operator pool tiling that facilitates the construction of problem-tailored pools for arbitrarily large problem instances. By first performing an Adaptive Derivative-Assembled Problem-Tailored Ansatz Variational Quantum Eigensolver (ADAPT-VQE) calculation on a smaller instance of the problem using a large, but computationally inefficient, operator pool, we extract the most relevant operators and use them to design more efficient pools for larger instances. We demonstrate the method here on strongly correlated quantum spin models in one and two dimensions, finding that ADAPT automatically finds a highly effective ansatz for these systems. Given that many problems, such as those arising in condensed matter physics, have a naturally repeating lattice structure, we expect the pool tiling method to be a widely applicable technique apt for such systems.
Reducing measurement costs by recycling the Hessian in adaptive variational quantum algorithms
Ramoa, Mafalda; Santos, Luis Paulo; Mayhall, Nicholas J.; Barnes, Edwin; Economou, Sophia E. (IOP Publishing, 2024-11-18)
Adaptive protocols enable the construction of more efficient state preparation circuits in variational quantum algorithms (VQAs) by utilizing data obtained from the quantum processor during the execution of the algorithm. This idea originated with Adaptive Derivative-Assembled Problem-Tailored variational quantum eigensolver (ADAPT-VQE), an algorithm that iteratively grows the state preparation circuit operator by operator, with each new operator accompanied by a new variational parameter, and where all parameters acquired thus far are optimized in each iteration. In ADAPT-VQE and other adaptive VQAs that followed it, it has been shown that initializing parameters to their optimal values from the previous iteration speeds up convergence and avoids shallow local traps in the parameter landscape. However, no other data from the optimization performed at one iteration is carried over to the next. In this work, we propose an improved quasi-Newton optimization protocol specifically tailored to adaptive VQAs. The distinctive feature in our proposal is that approximate second derivatives of the cost function are recycled across iterations in addition to optimal parameter values. We implement a quasi-Newton optimizer where an approximation to the inverse Hessian matrix is continuously built and grown across the iterations of an adaptive VQA. The resulting algorithm has the flavor of a continuous optimization where the dimension of the search space is augmented when the gradient norm falls below a given threshold. We show that this inter-optimization exchange of second-order information leads the approximate Hessian in the state of the optimizer to be consistently closer to the exact Hessian. As a result, our method achieves a superlinear convergence rate even in situations where the typical implementation of a quasi-Newton optimizer converges only linearly. Our protocol decreases the measurement costs in implementing adaptive VQAs on quantum hardware as well as the runtime of their classical simulation.
Effect of chronic vapor nicotine exposure on affective and cognitive behavior in male mice
Murdaugh, Laura B.; Miliano, Cristina; Chen, Irene; Faunce, Christine L.; Natividad, Luis A.; Gregus, Ann M.; Buczynski, Matthew W. (Nature Portfolio, 2024-03-19)
Nicotine use is a leading cause of preventable deaths worldwide, and most of those who attempt to quit will relapse. While electronic cigarettes and other electronic nicotine delivery systems (ENDS) were presented as a safer alternative to traditional cigarettes and promoted as devices to help traditional tobacco smokers reduce or quit smoking, they have instead contributed to increasing nicotine use among youths. Despite this, ENDS also represent a useful tool to create novel preclinical animal models of nicotine exposure that more accurately represent human nicotine use. In this study, we validated a chronic, intermittent, ENDS-based passive vapor exposure model in mice, and then measured changes in multiple behaviors related to nicotine abstinence. First, we performed a behavioral dose curve to investigate the effects of different nicotine inter-vape intervals on various measures including body weight, locomotor activity, and pain hypersensitivity. Next, we performed a pharmacokinetic study to measure plasma levels of nicotine and cotinine following chronic exposure for each inter-vape interval. Finally, we utilized a behavior test battery at a single dosing regimen that produces blood levels equivalent to human smokers in order to characterize the effects of chronic nicotine, vehicle, or passive airflow and identified nicotine-induced impairments in cognitive behavior.
Reversible Ferroelectric Polarization Modulation of Chiral Molecular Ferroelectrics by Circularly Polarized Light
Wang, Zhongxuan; Wang, Qian; Quan, Lina; Ren, Shenqiang (Wiley, 2025-01-21)
The optical modulation of ferroelectric polarization constitutes a transformative, non-contact strategy for the precise manipulation of ferroelectric properties, heralding advancements in optically stimulated ferroelectric devices. Despite its potential, progress in this domain is constrained by material limitations and the intricate nature of the underlying mechanisms. Recent studies have achieved efficient regulation of ferroelectric polarization and thermal conductivity in chiral ferroelectric thin films through the application of left- and right-handed circularly polarized light (LCP and RCP). Differential absorption of circularly polarized light (CPL) induces nonequilibrium carrier dynamics, generating distinctive interfacial electrostatic fields that enable precise control of ultrathin ferroelectric films. For (R)-BINOL−DIPASi and (S)-BINOL−DIPASi (C26H26O2Si), polarization changes surpass 23%, exhibiting opposite response under LCP and RCP excitation. In R chiral films, remnant polarization decreases from 1.05 µC cm−2 under LCP to 0.85 µC cm−2 under RCP, whereas in S chiral films, polarization increases from 0.85 µC cm−2 under LCP to 0.98 µC cm−2 under RCP. This reversible modulation facilitates reliable switching between ON and OFF states, presenting the potential of chiral ferroelectric materials for flexible, high-speed integrated photonic sensor technologies.
Magnet-in-ferroelectric crystals exhibiting photomultiferroicity
Wang, Zhongxuan; Wang, Qian; Gong, Weiyi; Chen, Amy; Islam, Abdullah; Quan, Lina; Woehl, Taylor J.; Yan, Qimin; Ren, Shenqiang (National Academy of Sciences, 2024-04-16)
Growing crystallographically incommensurate and dissimilar organic materials is fundamentally intriguing but challenging for the prominent cross-correlation phenomenon enabling unique magnetic, electronic, and optical functionalities. Here, we report the growth of molecular layered magnet-in-ferroelectric crystals, demonstrating photo-manipulation of interfacial ferroic coupling. The heterocrystals exhibit striking photomagnetization and magnetoelectricity, resulting in photomultiferroic coupling and complete change of their color while inheriting ferroelectricity and magnetism from the parent phases. Under a light illumination, ferromagnetic resonance shifts of 910 Oe are observed in heterocrystals while showing a magnetization change of 0.015 emu/g. In addition, a noticeable magnetization change (8% of magnetization at a 1,000 Oe external field) in the vicinity of ferro-to-paraelectric transition is observed. The mechanistic electric-field-dependent studies suggest the photoinduced ferroelectric field effect responsible for the tailoring of photo-piezo-magnetism. The crystallographic analyses further evidence the lattice coupling of a magnet-in-ferroelectric heterocrystal system.
Direct Observation of Circularly Polarized Nonlinear Optical Activities in Chiral Hybrid Lead Halides
Liu, Sunhao; Wang, Xiaoming; Dou, Yixuan; Wang, Qian; Kim, Jiyoon; Slebodnick, Carla; Yan, Yanfa; Quan, Lina (American Chemical Society, 2024-04-03)
Circularly polarized light emission is a crucial application in imaging, sensing, and photonics. However, utilizing low-energy photons to excite materials, as opposed to high-energy light excitation, can facilitate deep-tissue imaging and sensing applications. The challenge lies in finding materials capable of directly generating circularly polarized nonlinear optical effects. In this study, we introduce a chiral hybrid lead halide (CHLH) material system, R/S-DPEDPb3Br8·H2O (DPED = 1,2-diphenylethylenediammonium), which can directly produce circularly polarized second harmonic generation (CP-SHG) through linearly polarized infrared light excitation, exhibiting a polarization efficiency as high as 37% at room temperature. To understand the spin relaxation mechanisms behind the high polarization efficiency, we utilized two models, so-called D’yakonov-Perel’ (DP) and Bir-Aronov-Pikus (BAP) mechanisms. The unique zigzag inorganic frameworks within the hybrid structure are believed to reduce the dielectric confinement and exciton binding energy, thus enhancing spin polarization, especially in regions with a high excitation pump fluence based on the DP mechanism. In the case of low excitation pump fluence, the BAP mechanism dominates, as evidenced by the observed decrease in the polarization ratio from CP-SHG measurement. Using density functional theory analysis, we elucidate how the distinctive 8-coordination environment of lead bromide building blocks effectively suppresses spin-orbit coupling at the conduction band minimum. This suppression significantly diminishes spin-splitting, thereby slowing the spin relaxation rate.
Large exchange-driven intrinsic circular dichroism of a chiral 2D hybrid perovskite
Li, Shunran; Xu, Xian; Kocoj, Conrad A.; Zhou, Chenyu; Li, Yanyan; Chen, Du; Bennett, Joseph A.; Liu, Sunhao; Quan, Lina; Sarker, Suchismita; Liu, Mingzhao; Qiu, Diana Y.; Guo, Peijun (Nature Portfolio, 2024-03-22)
In two-dimensional chiral metal-halide perovskites, chiral organic spacers endow structural and optical chirality to the metal-halide sublattice, enabling exquisite control of light, charge, and electron spin. The chiroptical properties of metal-halide perovskites have been measured by transmissive circular dichroism spectroscopy, which necessitates thin-film samples. Here, by developing a reflection-based approach, we characterize the intrinsic, circular polarization-dependent complex refractive index for a prototypical two-dimensional chiral lead-bromide perovskite and report large circular dichroism for single crystals. Comparison with ab initio theory reveals the large circular dichroism arises from the inorganic sublattice rather than the chiral ligand and is an excitonic phenomenon driven by electron-hole exchange interactions, which breaks the degeneracy of transitions between Rashba-Dresselhaus-split bands, resulting in a Cotton effect. Our study suggests that previous data for spin-coated films largely underestimate the optical chirality and provides quantitative insights into the intrinsic optical properties of chiral perovskites for chiroptical and spintronic applications.
Supramolecular Metal Halide Complexes for High-Temperature Non-linear Optical Switches
Wang, Qian; Jin, Jianbo; Wang, Zhongxuan; Ren, Shenqiang; Ye, Qingyu; Dou, Yixuan; Liu, Sunhao; Morris, Amanda; Slebodnick, Carla; Quan, Lina (American Chemical Society, 2024-02-23)
Nonlinear optical (NLO) switching materials, which exhibit reversible intensity modulation in response to thermal stimuli, have found extensive applications across diverse fields including sensing, photoelectronics, and photonic applications. While significant progress has been made in solid-state NLO switching materials, these materials typically showcase their highest NLO performance near room temperature. However, this performance drastically deteriorates upon heating, primarily due to the phase transition undergone by the materials from noncentrosymmetric to centrosymmetric phase. Here, we introduce a new class of NLO switching materials, solid-state supramolecular compounds 18-Crown-6 ether@Cu2Cl4·4H2O (1·4H2O), exhibiting reversible and stable NLO switching when subjected to near-infrared (NIR) photoexcitation and/or thermal stimuli. The reversible crystal structure in response to external stimuli is attributed to the presence of a weakly coordinated bridging water molecule facilitated by hydrogen bonding/chelation interactions between the metal halide and crown-ether supramolecules. We observed an exceptionally high second-harmonic generation (SHG) signal under continuous photoexcitation, even at temperatures exceeding 110 °C. In addition, the bridging water molecules within the complex can be released and recaptured in a fully reversible manner, all without requiring excessive energy input. This feature allows for precise control of SHG signal activation and deactivation through structural transformations, resulting in a high-contrast off/on ratio, reaching values in the million-fold range.
Topography and structural regulation-induced enhanced recovery of lithium from shale gas produced water via polyethylene glycol functionalized layered double hydroxide
Pan, Yanan; Ji, Bin; Zhang, Wencai; Knott, Kenneth; Xia, Yang; Li, Qi; Rena, Bhavin (Elsevier, 2024-11)
Recovering lithium from wastewater generated during shale gas operations is essential for promoting sustainable resource utilization and safeguarding the environment. This study aimed to develop a lithium adsorbent by modifying lithium-aluminum layered double hydroxide (Li/Al-LDH) using varying concentrations of polyethylene glycol (PEG) of two distinct molecular weights. Remarkably, the application of a 10 % solution of PEG400 at 293 K and a liquid-to-solid ratio of 20 mL/g yielded a substantial enhancement in the lithium adsorption capacity, increasing from 2.50 mg/g to 3.61 mg/g. Characterization studies revealed positive alterations in the physicochemical attributes of Li/Al-LDH after the integration of PEG long chains, particularly in its surface and structural properties. Moreover, DFT calculations demonstrated an increase in Li+ binding energy from −1.05 eV to −3.24 eV. The lithium adsorption process in produced water using the modified material reached equilibrium within 15 min through a spontaneous chemical reaction. Its capability to release Li+ under neutral conditions offers an environmentally friendly advantage. With a stable cyclic adsorption capacity of around 4.00 mg/g over eight rounds, the material demonstrated remarkable recyclability. This research presents a pioneering advanced lithium adsorbent for the sustainable extraction of lithium from shale gas produced water, thereby advancing the new energy sector.
The Chemistry of the Defensive Secretions of Three Species of Millipedes in the Genus Brachycybe
Banks, Paige; Funkhouser, Emma M.; Macias, Angie M.; Lovett, Brian; Meador, Shelby; Hatch, Arden; Garraffo, H. Martin; Cartwright, Kaitie C.; Kasson, Matt T.; Marek, Paul E.; Jones, Tappey H.; Mevers, Emily (Springer, 2024-06-10)
Millipedes have long been known to produce a diverse array of chemical defense agents that deter predation. These compounds, or their precursors, are stored in high concentration within glands (ozadenes) and are released upon disturbance. The subterclass Colobognatha contains four orders of millipedes, all of which are known to produce terpenoid alkaloids—spare the Siphonophorida that produce terpenes. Although these compounds represent some of the most structurally-intriguing millipede-derived natural products, they are the least studied class of millipede defensive secretions. Here, we describe the chemistry of millipede defensive secretions from three species of Brachycybe: Brachycybe producta, Brachycybe petasata, and Brachycybe rosea. Chemical investigations using mass spectrometry-based metabolomics, chemical synthesis, and 2D NMR led to the identification of five alkaloids, three of which are new to the literature. All identified compounds are monoterpene alkaloids with the new compounds representing indolizidine (i.e. hydrogosodesmine) and quinolizidine alkaloids (i.e. homogosodesmine and homo-hydrogosodesmine). The chemical diversity of these compounds tracks the known species phylogeny of this genus, rather than the geographical proximity of the species. The indolizidines and quinolizidines are produced by non-sympatric sister species, B. producta and B. petasata, while deoxybuzonamine is produced by another set of non-sympatric sister species, B. rosea and Brachycybe lecontii. The fidelity between the chemical diversity and phylogeny strongly suggests that millipedes generate these complex defensive agents de novo and begins to provide insights into the evolution of their biochemical pathways.
Discovery of Biofilm Inhibitors from the Microbiota of Marine Egg Masses
Kyei, Lois; Piedl, Karla; Miller, Eleanor M.; Mevers, Emily (American Chemical Society, 2024-05-30)
Biofilms commonly develop in immunocompromised patients, which leads to persistent infections that are difficult to treat. In the biofilm state, bacteria are protected against both antibiotics and the host’s immune system; currently, there are no therapeutics that target biofilms. In this study, we screened a chemical fraction library representing the natural product capacity of the microbiota of marine egg masses, namely, the moon snail egg collars. This led to the identification of active fractions targeting both Pseudomonas aeruginosa and Staphylococcus aureus biofilms. Subsequent analysis revealed that a subset of these fractions were capable of eradicating preformed biofilms, all against S. aureus. Bioassay-guided isolation led us to identify pseudochelin A, a known siderophore, as a S. aureus biofilm inhibitor with an IC50 of 88.5 μM. Mass spectrometry-based metabolomic analyses revealed widespread production of pseudochelin A among fractions possessing S. aureus antibiofilm properties. In addition, a key biosynthetic gene involved in producing pseudochelin A was detected on 30% of the moon snail egg collars and pseudochelin A is capable of inhibiting the formation of biofilms (IC50 50.6 μM) produced by ecologically relevant bacterial strains. We propose that pseudochelin A may have a role in shaping the microbiome or protecting the egg collars from microbiofouling.
Design, Synthesis, and Antifungal Activity of 3-substituted-2(5H)-Oxaboroles
Campbell, Rose; Buchbinder, Nicklas W. ; Szwetkowski, Connor; Zhu, Yumeng; Piedl, Karla; Truong, Mindy; Matson, John B.; Santos, Webster L.; Mevers, Emily (American Chemical Society, 2024-02-22)
Next generation antimicrobial therapeutics are desperately needed as new pathogens with multiple resistance mechanisms continually emerge. Two oxaboroles, tavaborole and crisaborole, were recently approved as topical treatments for onychomycosis and atopic dermatitis, respectively, warranting further studies into this privileged structural class. Herein, we report the antimicrobial properties of 3-substituted-2(5H)-oxaboroles, an unstudied family of medicinally relevant oxaboroles. Our results revealed minimum inhibitory concentrations as low as 6.25 and 5.20 μg/mL against fungal (e.g., Penicillium chrysogenum) and yeast (Saccharomyces cerevisiae) pathogens, respectively. These oxaboroles were nonhemolytic and nontoxic to rat myoblast cells (H9c2). Structure-activity relationship studies suggest that planarity is important for antimicrobial activity, possibly due to the effects of extended conjugation between the oxaborole and benzene rings.
Neuromodulating Alkaloids from Millipede Defensive Secretions
Menegatti, Carla; Wood, Jared S.; Banks, Paige; Knott, Kenneth; Briganti, Jonathan S.; Briganti, Anthony J.; McNally, Samuel V. G.; Marek, Paul E.; Brown, Anne M.; Jones, Tappey H.; Williamson, R. Thomas; Mevers, Emily (American Chemical Society, 2024)
Millipedes have long been known to produce structurally diverse chemical defenses, including hydrogen cyanide, terpenoid alkaloids, and oxidized aromatics. Although the hydrogen cyanide and oxidized aromatic producing millipedes have been well studied, less than 10% of the terpenoid alkaloid producers have been chemically investigated. Several previous studies have shown that alkaloids disorient predators, but their biochemical target is currently unknown. Herein, we investigated the defensive secretions of a colobognath millipede, Ischnocybe plicata, and elucidated the constitution, absolute configuration, and conformation of four new highly oxidized terpenoid alkaloids, termed ischnocybines, using a range of analytical techniques. The ischnocybines are actively secreted from the defensive glands and were shown to disorient ants, a likely common predator. Evaluation of the ischnocybines in a panel of neuroreceptors revealed that ischnocybine A possesses potent (Ki 13.6 nM) and selective (100-fold) binding affinity for sigma-1, an orphan neuroreceptor, over sigma-2. These molecules represent the most complex alkaloids to be discovered from millipedes and provide the first potential insights into a biochemical target responsible for their defensive properties.
The microbiota of moon snail egg collars is shaped by host-specific factors
Piedl, Karla; Aylward, Frank O.; Mevers, Emily (American Society for Microbiology, 2024-10-04)
Moon snails (Family: Naticidae) lay eggs using a mixture of mucus and sediment to form an egg mass commonly referred to as an egg collar. These egg collars do not appear to experience micro-biofouling or predation, and this observation led us to hypothesize that the egg collars possess a chemically rich microbiota that protect the egg collars from pathogens. Herein, we sought to gain an understanding of the bacterial composition of egg collars laid by a single species of moon snails, Neverita delessertiana, by amplifying and sequencing the 16S rRNA gene from the egg collar and sediment samples collected at four distinct geographical regions in southwest Florida. Relative abundance and non-metric multidimensional scaling plots revealed distinct differences in the bacterial composition between the egg collar and sediment samples. In addition, the egg collars had a lower α-diversity than the sediment, with specific genera being significantly enriched in the egg collars. Analysis of microorganisms consistent across two seasons suggests that Flavobacteriaceae make up a large portion of the core microbiota (36%-58% of 16S sequences). We also investigated the natural product potential of the egg collar microbiota by sequencing a core biosynthetic gene, the adenylation domains (ADs), within the gene clusters of non-ribosomal peptide synthetase (NRPS). AD sequences matched multiple modules within known NRPS gene clusters, suggesting that these compounds might be produced within the egg collar system. This study lays the foundation for future studies into the ecological role of the moon snail egg collar microbiota. IMPORTANCE Animals commonly partner with microorganisms to accomplish essential tasks, including chemically defending the animal host from predation and/or infections. Understanding animal-microbe partnerships and the molecules used by the microbe to defend the animals from pathogens or predation has the potential to lead to new pharmaceutical agents. However, very few of these systems have been investigated. A particularly interesting system is nutrient-rich marine egg collars, which often lack visible protections, and are hypothesized to harbor beneficial microbes that protect the eggs. In this study, we gained an understanding of the bacterial strains that form the core microbiota of moon snail egg collars and gained a preliminary understanding of their natural product potential. This work lays the foundation for future work to understand the ecological role of the core microbiota and to study the molecules involved in chemically defending the moon snail eggs.
Bokeelamides: Lipopeptides from Bacteria Associated with Marine Egg Masses
Campbell, Rose; Kyei, Lois; Piedl, Karla; Zhang, Zheye; Chen, Ming; Mevers, Emily (American Chemical Society, 2024-11)
Moon snails (family: Naticidae) lay egg masses that are rich in bacterial species distinct from the surrounding environment. We hypothesized that this microbiome chemically defends the moon snail eggs from predation and pathogens. Herein, we report the discovery of bokeelamides, new lipopeptides from the egg mass-associated bacterium, Ectopseudomonas khazarica, which were discovered using mass spectrometry (MS)-based metabolomics. The structures of the bokeelamides were elucidated using two-dimensional (2D) nuclear magnetic resonance (NMR), tandem MS, Marfey’s, and genomic analyses.
Chain-length-controllable upcycling of polyolefins to sulfate detergents
Munyaneza, Nuwayo Eric; Ji, Ruiyang; DiMarco, Adrian; Miscall, Joel; Stanley, Lisa; Rorrer, Nicholas; Qiao, Rui; Liu, Guoliang (Springer Nature, 2024-11-18)
Escalating global plastic pollution and the depletion of fossil-based resources underscore the urgent need for innovative end-of-life plastic management strategies in the context of a circular economy. Thermolysis is capable of upcycling end-of-life plastics to intermediate molecules suitable for downstream conversion to eventually high-value chemicals, but tuning the molar mass distribution of the products is challenging. Here we report a temperature-gradient thermolysis strategy for the conversion of polyethylene and polypropylene into hydrocarbons with tunable molar mass distributions. The whole thermolysis process is catalyst- and hydrogen-free. The thermolysis of polyethylene and polyethylene/polypropylene mixtures with tailored temperature gradients generated oil with an average chain length of ~C14. The oil featured a high concentration of synthetically useful α-olefins. Computational fluid dynamics simulations revealed that regulating the reactor wall temperature was the key to tuning the hydrocarbon distributions. Subsequent oxidation of the obtained α-olefins by sulfuric acid and neutralization by potassium hydroxide afforded sulfate detergents with excellent foaming behaviour and emulsifying capacity and low critical micelle concentration. Overall, this work provides a viable approach to producing value-added chemicals from end-of-life plastics, improving the circularity of the anthropogenic carbon cycle.

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