Genomic features of bacterial adaptation to plants

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dc.contributor.authorLevy, Asafen
dc.contributor.authorGonzalez, Isai Salasen
dc.contributor.authorMittelviefhaus, Maximilianen
dc.contributor.authorClingenpeel, Scotten
dc.contributor.authorParedes, Sur Herreraen
dc.contributor.authorMiao, Jiaminen
dc.contributor.authorWang, Kunruen
dc.contributor.authorDevescovi, Giuliaen
dc.contributor.authorStillman, Kyraen
dc.contributor.authorMonteiro, Freddyen
dc.contributor.authorAlvarez, Bryan Rangelen
dc.contributor.authorLundberg, Alvarez Derek S.en
dc.contributor.authorLu, Tse-Yuanen
dc.contributor.authorLebeis, Sarahen
dc.contributor.authorJin, Zhaoen
dc.contributor.authorMcDonald, Meredithen
dc.contributor.authorKlein, Andrew P.en
dc.contributor.authorFeltcher, Meghan E.en
dc.contributor.authorRio, Tijana Glavinaen
dc.contributor.authorGrant, Sarah R.en
dc.contributor.authorDoty, Sharon L.en
dc.contributor.authorLey, Ruth E.en
dc.contributor.authorZhao, Bingyu Y.en
dc.contributor.authorVenturi, Vittorioen
dc.contributor.authorPelletier, Dale A.en
dc.contributor.authorVorholt, Julia A.en
dc.contributor.authorTringe, Susannah G.en
dc.contributor.authorWoyke, Tanjaen
dc.contributor.authorDangl, Jeffery L.en
dc.contributor.departmentSchool of Plant and Environmental Sciencesen
dc.date.accessioned2020-01-22T04:47:04Zen
dc.date.available2020-01-22T04:47:04Zen
dc.date.issued2018-01-01en
dc.date.updated2020-01-22T04:46:58Zen
dc.description.abstractPlants intimately associate with diverse bacteria. Plant-associated bacteria have ostensibly evolved genes that enable them to adapt to plant environments. However, the identities of such genes are mostly unknown, and their functions are poorly characterized. We sequenced 484 genomes of bacterial isolates from roots of Brassicaceae, poplar, and maize. We then compared 3,837 bacterial genomes to identify thousands of plant-associated gene clusters. Genomes of plant-associated bacteria encode more carbohydrate metabolism functions and fewer mobile elements than related non-plant-associated genomes do. We experimentally validated candidates from two sets of plant-associated genes: one involved in plant colonization, and the other serving in microbe-microbe competition between plant-associated bacteria. We also identified 64 plant-associated protein domains that potentially mimic plant domains; some are shared with plant-associated fungi and oomycetes. This work expands the genome-based understanding of plant-microbe interactions and provides potential leads for efficient and sustainable agriculture through microbiome engineering.en
dc.description.versionPublished (Publication status)en
dc.format.extentPages 138-+en
dc.format.extent16 page(s)en
dc.format.mimetypeapplication/pdfen
dc.identifier.doihttps://doi.org/10.1038/s41588-017-0012-9en
dc.identifier.eissn1546-1718en
dc.identifier.issn1061-4036en
dc.identifier.issue1en
dc.identifier.other10.1038/s41588-017-0012-9 (PII)en
dc.identifier.pmid29255260en
dc.identifier.urihttp://hdl.handle.net/10919/96534en
dc.identifier.volume50en
dc.language.isoenen
dc.publisherNature Publishing Groupen
dc.relation.urihttp://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000423157400017&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=930d57c9ac61a043676db62af60056c1en
dc.rightsIn Copyrighten
dc.rights.urihttp://rightsstatements.org/vocab/InC/1.0/en
dc.subjectGenetics & Heredityen
dc.subjectIII PROTEIN SECRETIONen
dc.subjectRHIZOSPHERE MICROBIOMEen
dc.subjectPATHOGEN EFFECTORSen
dc.subjectLEGUME NODULATIONen
dc.subjectSYSTEMen
dc.subjectLECTINen
dc.subjectGENEen
dc.subjectBIOSYNTHESISen
dc.subjectVIRULENCEen
dc.subjectDATABASEen
dc.subjectDevelopmental Biologyen
dc.subject11 Medical and Health Sciencesen
dc.subject06 Biological Sciencesen
dc.subject.meshBacteriaen
dc.subject.meshPlantsen
dc.subject.meshPlant Rootsen
dc.subject.meshGenomicsen
dc.subject.meshAdaptation, Physiologicalen
dc.subject.meshSymbiosisen
dc.subject.meshGenome, Bacterialen
dc.subject.meshHost-Pathogen Interactionsen
dc.titleGenomic features of bacterial adaptation to plantsen
dc.title.serialNature Geneticsen
dc.typeArticle - Refereeden
dc.type.dcmitypeTexten
dc.type.otherArticleen
dc.type.otherJournalen
dcterms.dateAccepted2017-11-10en
pubs.organisational-group/Virginia Tech/Agriculture & Life Sciencesen
pubs.organisational-group/Virginia Tech/All T&R Facultyen
pubs.organisational-group/Virginia Tech/Agriculture & Life Sciences/CALS T&R Facultyen
pubs.organisational-group/Virginia Tech/Agriculture & Life Sciences/School of Plant and Environmental Sciencesen
pubs.organisational-group/Virginia Tech/University Research Institutes/Fralin Life Sciences/Durelle Scotten
pubs.organisational-group/Virginia Techen
pubs.organisational-group/Virginia Tech/University Research Institutes/Fralin Life Sciencesen
pubs.organisational-group/Virginia Tech/University Research Institutesen

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