Genome-wide analysis of Aux/IAA and ARF gene families in Populus trichocarpa

Simple item page
dc.contributor.authorKalluri, Udaya C.en
dc.contributor.authorDiFazio, Stephen P.en
dc.contributor.authorBrunner, Amy M.en
dc.contributor.authorTuskan, Gerald A.en
dc.contributor.departmentForest Resources and Environmental Conservationen
dc.date.accessioned2012-08-24T12:09:12Zen
dc.date.available2012-08-24T12:09:12Zen
dc.date.issued2007-11-06en
dc.date.updated2012-08-24T12:09:12Zen
dc.description.abstractBackground Auxin/Indole-3-Acetic Acid (Aux/IAA) and Auxin Response Factor (ARF) transcription factors are key regulators of auxin responses in plants. We identified the suites of genes in the two gene families in Populus and performed comparative genomic analysis with Arabidopsis and rice. Results A total of 35 Aux/IAA and 39 ARF genes were identified in the Populus genome. Comparative phylogenetic analysis revealed that several Aux/IAA and ARF subgroups have differentially expanded or contracted between the two dicotyledonous plants. Activator ARF genes were found to be two fold-overrepresented in the Populus genome. PoptrIAA and PoptrARF gene families appear to have expanded due to high segmental and low tandem duplication events. Furthermore, expression studies showed that genes in the expanded PoptrIAA3 subgroup display differential expression. Conclusion The present study examines the extent of conservation and divergence in the structure and evolution of Populus Aux/IAA and ARF gene families with respect to Arabidopsis and rice. The gene-family analysis reported here will be useful in conducting future functional genomics studies to understand how the molecular roles of these large gene families translate into a diversity of biologically meaningful auxin effects.en
dc.description.versionPublished versionen
dc.format.mimetypeapplication/pdfen
dc.identifier.citationBMC Plant Biology. 2007 Nov 06;7(1):59en
dc.identifier.doihttps://doi.org/10.1186/1471-2229-7-59en
dc.identifier.urihttp://hdl.handle.net/10919/18915en
dc.language.isoenen
dc.rightsCreative Commons Attribution 4.0 Internationalen
dc.rights.holderUdaya C Kalluri et al.; licensee BioMed Central Ltd.en
dc.rights.urihttp://creativecommons.org/licenses/by/4.0/en
dc.titleGenome-wide analysis of Aux/IAA and ARF gene families in Populus trichocarpaen
dc.title.serialBMC Plant Biologyen
dc.typeArticle - Refereeden
dc.type.dcmitypeTexten

Files

Original bundle
Now showing 1 - 5 of 20
Name:
1471-2229-7-59.xml
Size:
158.72 KB
Format:
Extensible Markup Language
Download
Thumbnail Image
Name:
1471-2229-7-59.pdf
Size:
431.88 KB
Format:
Adobe Portable Document Format
Download
Name:
1471-2229-7-59-S7.XLS
Size:
34 KB
Format:
Microsoft Excel
Download
Thumbnail Image
Name:
1471-2229-7-59-S3.PDF
Size:
59.57 KB
Format:
Adobe Portable Document Format
Download
Name:
1471-2229-7-59-S2.XLS
Size:
17.5 KB
Format:
Microsoft Excel
Download
License bundle
Now showing 1 - 1 of 1
Name:
license.txt
Size:
1.5 KB
Format:
Item-specific license agreed upon to submission
Description:
Download

Collections

Journal Articles, BioMed Central and SpringerOpen
Scholarly Works, Forest Resources and Environmental Conservation