Identification of Candidate Ice Nucleation Activity (INA) Genes in Fusarium avenaceum by Combining Phenotypic Characterization with Comparative Genomics and Transcriptomics
| dc.contributor.author | Yang, Shu | en |
| dc.contributor.author | Rojas, Mariah | en |
| dc.contributor.author | Coleman, Jeffrey J. | en |
| dc.contributor.author | Vinatzer, Boris A. | en |
| dc.date.accessioned | 2022-09-22T13:15:27Z | en |
| dc.date.available | 2022-09-22T13:15:27Z | en |
| dc.date.issued | 2022-09-13 | en |
| dc.date.updated | 2022-09-22T12:02:01Z | en |
| dc.description.abstract | Ice nucleation activity (INA) is the capacity of certain particles to catalyze ice formation at temperatures higher than the temperature at which pure water freezes. INA impacts the ratio of liquid to frozen cloud droplets and, therefore, the formation of precipitation and Earth’s radiative balance. Some <i>Fusarium</i> strains secrete ice-nucleating particles (INPs); they travel through the atmosphere and may thus contribute to these atmospheric processes. <i>Fusarium</i> INPs were previously found to consist of proteinaceous aggregates. Here, we determined that in <i>F. avenaceum</i>, the proteins forming these aggregates are smaller than 5 nm and INA is higher after growth at low temperatures and varies among strains. Leveraging these findings, we used comparative genomics and transcriptomics to identify candidate INA genes. Ten candidate INA genes that were predicted to encode secreted proteins were present only in the strains that produced the highest number of INPs. In total, 203 candidate INA genes coding for secreted proteins were induced at low temperatures. Among them, two genes predicted to encode hydrophobins stood out because hydrophobins are small, secreted proteins that form aggregates with amphipathic properties. We discuss the potential of the candidate genes to encode INA proteins and the next steps necessary to identify the molecular basis of INA in <i>F. avenaceum</i>. | en |
| dc.description.version | Published version | en |
| dc.format.mimetype | application/pdf | en |
| dc.identifier.citation | Yang, S.; Rojas, M.; Coleman, J.J.; Vinatzer, B.A. Identification of Candidate Ice Nucleation Activity (INA) Genes in Fusarium avenaceum by Combining Phenotypic Characterization with Comparative Genomics and Transcriptomics. J. Fungi 2022, 8, 958. | en |
| dc.identifier.doi | https://doi.org/10.3390/jof8090958 | en |
| dc.identifier.uri | http://hdl.handle.net/10919/111953 | en |
| dc.language.iso | en | en |
| dc.publisher | MDPI | en |
| dc.rights | Creative Commons Attribution 4.0 International | en |
| dc.rights.uri | http://creativecommons.org/licenses/by/4.0/ | en |
| dc.subject | ice nucleation activity | en |
| dc.subject | Fusarium avenaceum | en |
| dc.subject | fungi | en |
| dc.subject | comparative genomics | en |
| dc.subject | transcriptomics | en |
| dc.title | Identification of Candidate Ice Nucleation Activity (INA) Genes in Fusarium avenaceum by Combining Phenotypic Characterization with Comparative Genomics and Transcriptomics | en |
| dc.title.serial | Journal of Fungi | en |
| dc.type | Article - Refereed | en |
| dc.type.dcmitype | Text | en |