TXM-Sandbox: an open-source software for transmission X-ray microscopy data analysis

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dc.contributor.authorXiao, Xianghuien
dc.contributor.authorXu, Zhengruien
dc.contributor.authorLin, Fengen
dc.contributor.authorLee, Wah-Keaten
dc.date.accessioned2022-08-31T13:02:39Zen
dc.date.available2022-08-31T13:02:39Zen
dc.date.issued2022-01en
dc.description.abstractA transmission X-ray microscope (TXM) can investigate morphological and chemical information of a tens to hundred micrometre-thick specimen on a length scale of tens to hundreds of nanometres. It has broad applications in material sciences and battery research. TXM data processing is composed of multiple steps. A workflow software has been developed that integrates all the tools required for general TXM data processing and visualization. The software is written in Python and has a graphic user interface in Jupyter Notebook. Users have access to the intermediate analysis results within Jupyter Notebook and have options to insert extra data processing steps in addition to those that are integrated in the software. The software seamlessly integrates ImageJ as its primary image viewer, providing rich image visualization and processing routines. As a guide for users, several TXM specific data analysis issues and examples are also presented.en
dc.description.notesThe following funding is acknowledged: DOE Office of Science (contract No. DE-SC0012704); National Science Foundation (grant No. DMR-2045570).en
dc.description.sponsorshipDOE Office of Science [DE-SC0012704]; National Science Foundation [DMR-2045570]en
dc.description.versionPublished versionen
dc.format.mimetypeapplication/pdfen
dc.identifier.doihttps://doi.org/10.1107/S1600577521011978en
dc.identifier.eissn1600-5775en
dc.identifier.issn0909-0495en
dc.identifier.pmid34985444en
dc.identifier.urihttp://hdl.handle.net/10919/111674en
dc.identifier.volume29en
dc.language.isoenen
dc.publisherInternational Union of Crystallographyen
dc.rightsCreative Commons Attribution 4.0 Internationalen
dc.rights.urihttp://creativecommons.org/licenses/by/4.0/en
dc.subjecttransmission X-ray microscopeen
dc.subjectdata analysisen
dc.subjectcomputer programsen
dc.subjectX-ray imagingen
dc.subjectXANESen
dc.titleTXM-Sandbox: an open-source software for transmission X-ray microscopy data analysisen
dc.title.serialJournal of Synchrotron Radiationen
dc.typeArticle - Refereeden
dc.type.dcmitypeTexten

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