Assessment of Genetic Diversity and Population Structure in Iranian Cannabis Germplasm

Simple item page
dc.contributor.authorSoorni, Aboozaren
dc.contributor.authorFatahi, Rezaen
dc.contributor.authorHaak, David C.en
dc.contributor.authorSalami, Seyed Alirezaen
dc.contributor.authorBombarely, Aurelianoen
dc.contributor.departmentFralin Life Sciences Instituteen
dc.contributor.departmentSchool of Plant and Environmental Sciencesen
dc.date.accessioned2018-01-05T12:25:33Zen
dc.date.available2018-01-05T12:25:33Zen
dc.date.issued2017-11-15en
dc.description.abstractCannabis sativa has a complex history reflected in both selection on naturally occurring compounds and historical trade routes among humans. Iran is a rich resource of natural populationswhich hold the promise to characterize historical patterns of population structure and genetic diversity within Cannabis. Recent advances in high-throughput DNA sequencing technologies have dramatically increased our ability to produce information to the point that it is now feasible to inexpensively obtain population level genotype information at a large scale. In the present investigation, we have explored the use of Genotyping-By-Sequencing (GBS) in Iranian cannabis. We genotyped 98 cannabis samples 36 from Iranian locations and 26 accessions from two germplasm collections. In total, 24,710 high-quality Single Nucleotide Polymorphisms (SNP) were identified. Clustering analysis by Principal Component Analysis (PCA) identified two genetic clusters among Iranian populations and fineSTRUCTURE analysis identified 19 populations with some geographic partitioning. We defined Iranian cannabis in two main groups using the results of the PCA and discovered some strong signal to define some locations as population according to fineSTRUCTURE analyses. However, single nucleotide variant analysis uncovered a relatively moderate level of variation among Iranian cannabis.en
dc.description.versionPublished versionen
dc.format.extent10 pagesen
dc.format.mimetypeapplication/pdfen
dc.identifier.doihttps://doi.org/10.1038/s41598-017-15816-5en
dc.identifier.issn2045-2322en
dc.identifier.orcidHaak, DC [0000-0002-3692-3152]en
dc.identifier.orcidBombarely, A [0000-0001-6257-8914]en
dc.identifier.urihttp://hdl.handle.net/10919/81543en
dc.identifier.volume7en
dc.language.isoenen
dc.publisherNature Publishing Groupen
dc.relation.urihttp://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000415266100017&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=930d57c9ac61a043676db62af60056c1en
dc.rightsCreative Commons Attribution 4.0 Internationalen
dc.rights.urihttp://creativecommons.org/licenses/by/4.0/en
dc.subjectsativa len
dc.subjectdna markersen
dc.subjectmicrosatellite markersen
dc.subjectacid-synthaseen
dc.subjectr-packageen
dc.subjectmale sexen
dc.subjectsequenceen
dc.subjecthempen
dc.subjectidentificationen
dc.titleAssessment of Genetic Diversity and Population Structure in Iranian Cannabis Germplasmen
dc.title.serialScientific Reportsen
dc.typeArticle - Refereeden
dc.type.dcmitypeTexten
pubs.organisational-group/Virginia Techen
pubs.organisational-group/Virginia Tech/Agriculture & Life Sciencesen
pubs.organisational-group/Virginia Tech/Agriculture & Life Sciences/CALS T&R Facultyen
pubs.organisational-group/Virginia Tech/Agriculture & Life Sciences/Horticultureen
pubs.organisational-group/Virginia Tech/Agriculture & Life Sciences/Plant Pathology, Physiology, & Weed Scienceen
pubs.organisational-group/Virginia Tech/All T&R Facultyen
pubs.organisational-group/Virginia Tech/University Research Institutesen
pubs.organisational-group/Virginia Tech/University Research Institutes/Fralin Life Sciencesen
pubs.organisational-group/Virginia Tech/University Research Institutes/Fralin Life Sciences/Fralin Affiliated Facultyen

Files

Original bundle
Now showing 1 - 1 of 1
Thumbnail Image
Name:
Assessment of Genetic Diversity and Population Structure in Iranian Cannabis Germplasm.pdf
Size:
1.72 MB
Format:
Adobe Portable Document Format
Description:
Publisher's Version
Download
License bundle
Now showing 1 - 1 of 1
Name:
VTUL_Distribution_License_2016_05_09.pdf
Size:
18.09 KB
Format:
Adobe Portable Document Format
Description:
Download

Collections

All Faculty Deposits
Open Access Subvention Fund Articles
Scholarly Works, Fralin Life Sciences Institute
Scholarly Works, School of Plant and Environmental Sciences